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Wyszukujesz frazę "marker gene" wg kryterium: Temat


Tytuł:
Transformation of wild Solanum species resistant to late blight by using reporter gene gfp and msh2 genes
Autorzy:
Rakosy-Tican, Lenuta
Aurori, Adriana
Aurori, Cristian M.
Ispas, Gabriela
Famelaer, Ivan
Powiązania:
https://bibliotekanauki.pl/articles/2198986.pdf
Data publikacji:
2004-12-20
Wydawca:
Instytut Hodowli i Aklimatyzacji Roślin
Tematy:
Agrobacterium tumefaciens mediated transformation
DNA mismatch repair
gfp
nptII marker gene
Opis:
Green fluorescent protein (gfp) reporter gene and nptII marker gene were used to optimize Agrobacterium tumefaciens (agro) mediated transformation of wild Solanum genotypes resistant to late blight. Different genotypes of Solanum bulbocastanum, S. chacoense, S. microdontum and S. verrucosum were assessed for their regeneration ability on MS based media and for agro-mediated transformation. As the first step reporter genes were used to optimize transformation protocol for each species and then the transfer of genes involved in mismatch repair of DNA were attempted in Solanum chacoense. For transformation, either leaf or stem fragments were used. It was shown that gfp is a valuable and elegant tool for monitoring the efficiency of transformation or the occurrence of chimera in all genotypes. Transformation efficiency was dependent on a plant genotype. A number of genotypes have been successfully transformed and they expressed constitutively the bright green fluorescence of gfp without any side effects. The most recalcitrant species proved to be S. microdontum, which did not regenerate plants although different media and phytohormones had been used. The best protocol for S. chacoense transformation was also found to work in the transfer of msh2 genes. Msh2 isolated from Arabidopsis was used and transferred either as mutated (Apa) or antisense (As) gene. The integration of msh2-mutated gene into S. chacoense genome was demonstrated by PCR amplification and confirmed by RT-PCR for some of the putative transgenic clones. The implications of mismatch repair in homologous recombination and its importance for potato improvement are discussed. 
Źródło:
Plant Breeding and Seed Science; 2004, 50; 119-127
1429-3862
2083-599X
Pojawia się w:
Plant Breeding and Seed Science
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Role of the polycomb repressive complex (PRC2) in the induction of somatic embryogenesis Medicago truncatula cv. Jemalong
Autorzy:
Orlowska, A.
Igielski, R.
Kepczynska, E.
Powiązania:
https://bibliotekanauki.pl/articles/951214.pdf
Data publikacji:
2015
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
somatic embryogenesis
somatic cell
marker gene
leafy cotyledon1
embryogenesis
polycomb repressive complex
Medicago truncatula
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2015, 96, 1
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Apoplastic ROS sensing and signalling
Autorzy:
Kangasjarvi, J.
Powiązania:
https://bibliotekanauki.pl/articles/80047.pdf
Data publikacji:
2013
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
conference
reactive oxygen species
signalling
plant cell
stress adaptation
acclimation
cysteine-rich protein
extracellular protein
gene regulation
marker gene
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2013, 94, 2
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Integrated statistical and rule-mining techniques for dna methylation and gene expression data analysis
Autorzy:
Mallik, S.
Mukhopadhyay, A.
Maulik, U.
Powiązania:
https://bibliotekanauki.pl/articles/1396742.pdf
Data publikacji:
2013
Wydawca:
Społeczna Akademia Nauk w Łodzi. Polskie Towarzystwo Sieci Neuronowych
Tematy:
statistical analysis
gene marker
methylation
genetic algorithm
DNA
Opis:
For determination of the relationships among significant gene markers, statistical analysis and association rule mining are considered as very useful protocols. The first protocol identifies the significant differentially expressed/methylated gene markers, whereas the second one produces the interesting relationships among them across different types of samples or conditions. In this article, statistical tests and association rule mining based approaches have been used on gene expression and DNA methylation datasets for the prediction of different classes of samples (viz., Uterine Leiomyoma/class-formersmoker and uterine myometrium/class-neversmoker). A novel rule-based classifier is proposed for this purpose. Depending on sixteen different rule-interestingness measures, we have utilized a Genetic Algorithm based rank aggregation technique on the association rules which are generated from the training set of data by Apriori association rule mining algorithm. After determining the ranks of the rules, we have conducted a majority voting technique on each test point to estimate its class-label through weighted-sum method. We have run this classifier on the combined dataset using 4-fold cross-validations, and thereafter a comparative performance analysis has been made with other popular rulebased classifiers. Finally, the status of some important gene markers has been identified through the frequency analysis in the evolved rules for the two class-labels individually to formulate the interesting associations among them.
Źródło:
Journal of Artificial Intelligence and Soft Computing Research; 2013, 3, 2; 101-115
2083-2567
2449-6499
Pojawia się w:
Journal of Artificial Intelligence and Soft Computing Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Activity of hygromycin phosphotransferase marker gene optimized for expression in plants for the construction of vectors for genetic modifications of grasses
Autorzy:
Malec, K.
Kowalska, M.
Podkowinski, J.
Zielinska, M.
Cerazy, J.
Slusarkiewicz-Jarzina, A.
Ponitka, A.
Jezowski, S.
Pniewski, T.
Powiązania:
https://bibliotekanauki.pl/articles/951205.pdf
Data publikacji:
2015
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
conference
plant biotechnology
hygromycin phosphotransferase
genetic modification
grass
Miscanthus x giganteus
Miscanthus sinensis
Miscanthus sacchariflorus
genetic engineering
plant transformation
marker gene
molecular biology
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2015, 96, 1
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Linkage and interdependence of A2MD1 and A2ME2 alpha2-macroglobulin genes in cattle
Autorzy:
Wegrzyn, J
Skiba, E
Krzyscin, P
Powiązania:
https://bibliotekanauki.pl/articles/2047144.pdf
Data publikacji:
1997
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
antigen marker
gene
animal production
alpha2-macroglobulin
cattle
antigenic determinant
protein
marker
A2MD1 gene
A2ME2 gene
Opis:
The transmission of previously described genes A2MD1 and A2ME2 that determine antigenic markers of alpha₂-macroglobulins A₂mD1 and А₂mЕ2 in cattle was studied. The starting point for the analyses was the lack of individuals negative for both markers in the population of 3551 Black-and-White, Red-and-White, Polish Red and Simmental cattle and interbreed crosses. Controlling of these specificities by allelic genes or genes from closely linked loci was considered. To support or reject this hypothesis, the independence test 2 x 2 and analysis of segregation of A₂mD1 and А₂mЕ2 in the offsprings of all phenotypic matings found and of selected matings in which genotypes of sires were determined, were used. It was found that the observed segregation of antigenic markers in the offsprings rules out the possibility that they are determined by allelic genes. The results obtained show that markers A₂mD1 and А₂mЕ2 are controlled by the genes A2MD1 and A2ME2 from closely linked loci. Moreover it seems that only those haplotypes are transmitted in which both genes - A2MD1 and A2ME2, or one of them - A2MD1 or A2ME2, are present. No haplotypc would then be transmitted (would occur?) in which both genes are in the recessive form. recessive form.
Źródło:
Journal of Applied Genetics; 1997, 38, 2; 187-193
1234-1983
Pojawia się w:
Journal of Applied Genetics
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Identification of four new est-based markers on the apple (Malus × domestica) genetic map
Autorzy:
Keller-Przybylkowicz, S.
Korbin, M.
Powiązania:
https://bibliotekanauki.pl/articles/1855.pdf
Data publikacji:
2014
Wydawca:
Instytut Ogrodnictwa
Tematy:
comparative mapping
CAPS marker
gene coding
SSR marker
ascorbic acid
sugar metabolism
apple
Malus x domestica
Źródło:
Journal of Horticultural Research; 2014, 22, 1
2300-5009
Pojawia się w:
Journal of Horticultural Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Identification of fecundity gene [FecB] carriers using microsatellite markers and its effect on sheep weight
Autorzy:
Nowak, Z
Charon, K.M.
Powiązania:
https://bibliotekanauki.pl/articles/2041928.pdf
Data publikacji:
2001
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
fecundity gene
microsatellite marker
sheep
animal breeding
body weight
weight
identification
Źródło:
Journal of Applied Genetics; 2001, 42, 1; 49-57
1234-1983
Pojawia się w:
Journal of Applied Genetics
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Plasminogen activator inhibitor-1 (PAI-1) gene 4G/5G promoter polymorphism is not associated with breast cancer.
Autorzy:
Błasiak, Janusz
Smolarz, Beata
Powiązania:
https://bibliotekanauki.pl/articles/1044431.pdf
Data publikacji:
2000
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
gene polymorphism
PAI-1 gene
prognostic marker
plasminogen activator inhibitor-1 (PAI-1)
breast cancer
Opis:
The antigen content of plasminogen activator inhibitor-1 (PAI-1) in primary breast cancer tissue extracts may be of strong prognostic value: high levels of PAI-1 in tumors predict poor prognosis for patients. The gene encoding PAI-1 is highly polymorphic and an insertion (5G)/deletion (4G) polymorphism in the PAI-1 gene promoter (the 4G/5G polymorphism), may have functional significance in PAI-1 expression. In the present work the distribution of genotypes and frequency of alleles of the 4G/5G polymorphism in subjects with breast cancer were investigated. Tumor tissues were obtained from 100 postmenopausal women with node-negative and node-positive ductal breast carcinoma with uniform tumor size. Blood samples from age matched healthy women served as control. The 4G/5G polymorphism was determined by PCR amplification using the allele specific primers. The distribution of the genotypes of the 4G/5G polymorphism in both control and patients did not differ significantly (P > 0.05) from those predicted by the Hardy-Weinberg distribution. There were no differences in the genotype distributions and allele frequencies between node-positive and node-negative patients. The 4G/5G polymorphism may not be linked with elevated level of PAI-1 observed in breast cancer and therefore may not be associated with appearance and/or progression of breast cancer.
Źródło:
Acta Biochimica Polonica; 2000, 47, 1; 191-199
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Molecular markers for leaf rust resistance genes in wheat
Autorzy:
Chelkowski, J
Stepien, L.
Powiązania:
https://bibliotekanauki.pl/articles/2041986.pdf
Data publikacji:
2001
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
brown rust
wheat
stem rust
plant genetics
resistance gene
fungi
molecular marker
yellow rust
Źródło:
Journal of Applied Genetics; 2001, 42, 2; 117-126
1234-1983
Pojawia się w:
Journal of Applied Genetics
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Powdery mildew resistance genes in wheat: verification of STS markers
Autorzy:
Stepien, L
Chen, Y.
Chelkowski, J.
Kowalczyk, K.
Powiązania:
https://bibliotekanauki.pl/articles/2048311.pdf
Data publikacji:
2001
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Aegilops speltoides
randomly amplified polymorphic DNA analysis
powdery mildew
wheat
wheat cultivar
Sequence Tagged Site marker
resistance gene
Pm gene
Źródło:
Journal of Applied Genetics; 2001, 42, 4; 413-423
1234-1983
Pojawia się w:
Journal of Applied Genetics
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Utility of two mitochondrial markers for identification of Picea abies refugial origin
Autorzy:
Litkowiec, M
Dering, M.
Lewandowski, A.
Powiązania:
https://bibliotekanauki.pl/articles/41333.pdf
Data publikacji:
2009
Wydawca:
Polska Akademia Nauk. Instytut Dendrologii PAN
Tematy:
coniferous plant
tree
Norway spruce
Picea abies
mtDNA
molecular marker
mitochondrial marker
identification
polymerase chain reaction
RFLP analysis
gene pool conservation
forest ecosystem
plant population
Opis:
Picea abies (L.) Karst is one of the most important coniferous species of Europe from both ecological and economical points of view. Traditional methods for the gene pool conservation and biodiversity maintenance in forest ecosystems have been practiced in many countries. For progress in this field using highly polymorphic genetic molecular markers is needed. Our goal was to demonstrate the utility of two polymorphic mitochondrial markers mt15-D02 and nad1 b/c in identification native Norway spruce stands. This molecular markers were tested in 1401 individuals from 59 Polish Norway spruce populations. We detected three alleles, which are called1, 2 and3, for locus mt15-D02 and two alleles , which are called1 and2, for locus nad1 b/c in our material. All five variants of alleles indicate the natural origin of P. abies. Result of this study shows that molecular marker mt15-D02 is easy to use and more informative in compare to marker nad1 b/c.
Źródło:
Dendrobiology; 2009, 61; 65-71
1641-1307
Pojawia się w:
Dendrobiology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Marker-assisted selection for scald (Rhynchosporium commune L.) resistance gene(s) in barley breeding for dry areas
Autorzy:
Sayed, H.
Baum, M.
Powiązania:
https://bibliotekanauki.pl/articles/65161.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
marker-assisted selection
marker aided selection zob.marker-assisted selection
leaf blotch
scald zob.leaf blotch
Rhynchosporium commune
resistance gene
barley
plant breeding
dry climate
foliar disease
plant disease
fungal disease
Opis:
Barley scald, caused by Rhynchosporium commune is one of the most prevalent diseases in barley (Hordeum vulgare L.) worldwide. The primary loss from scald is reduced yield, which can exceed 25% in dry areas. In our earlier studies, we developed a low-resolution linkage map for recombinant inbred lines of the cross Tadmor/WI2291. Quantitative trait loci (QTLs) for scald were localized on chromosomes 2H and 3H flanked by Simple Sequence Repeat (SSR) markers HVM54 and Bmac0093b on 2H and HVLTPP8, HVM62 and Bmag0006 on 3H. These chromosome 3H markers were found to be located close to the Rrs1 − R. commune resistance gene(s) on chromosome 3H. In this study, 10 homozygous resistant and 10 homozygous susceptible plants each from the F7 population of Tadmor/ Sel160, a panel of 23 barley varieties used routinely in the International Centre for Agricultural Research in the Dry Areas (ICARDA) breeding program and three populations were used for scald resistance screening using 25 DNA markers that are located very close to scald resistance gene(s) on barley chromosomes. Only five of those markers clearly discriminated co-dominantly between resistant and susceptible plants. These markers, Ebmac0871- SSR, HVS3-SCAR, Bmag0006-SSR, reside on different arms of barley chromosome 3H. Ebmac871 is localized on the short arm of 3H and HVS3 and Bmag0006 are localized on the long arm of 3H. This result indicates that the scald resistance genes which they tag are probably close to the centromeric region of this chromosome. Scald resistance from several sources map to the proximal region of the long arm of chromosome 3H, forming the complex Rrs1 locus. The availability of highly polymorphic markers for the discrimination of breeding material would be extremely useful for barley breeders to select for the trait at the DNA level rather than relying on phenotypic expression and infection reaction.
Źródło:
Journal of Plant Protection Research; 2018, 58, 4
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
How do eyespot resistance genes transferred into winter wheat breeding lines affect their yield?
Autorzy:
Kwiatek, M.
Wisniewska, H.
Korbas, M.
Gawlowska, M.
Belter, J.
Majka, M.
Danielewicz, J.
Powiązania:
https://bibliotekanauki.pl/articles/66314.pdf
Data publikacji:
2016
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
eyespot
resistance gene
wheat
winter wheat
breeding line
yield
inoculation
isoenzyme
molecular marker
plant resistance
Triticum aestivum
Opis:
Eyespot can reduce yields, even up to 50%. There are four genetically characterized resistances in wheat varieties, controlled by: (1) the Pch1 gene, transferred from Aegilops ventricosa; (2) the Pch2 gene, originating from wheat variety Capelle Desprez; (3) the Pch3 gene, originating from Dasypyrum villosum; and (4) the Q.Pch.jic-5A gene, a quantitative trait locus (QTL) located on chromosome 5A of Capelle Desprez. However, those loci have drawbacks, such as linkage of Pch1 with deleterious traits and limited effectiveness of Pch2 against the disease. Here we present an initial study which aims to characterize wheat pre-registration breeding lines carrying 12 eyespot resistance genes, consider their resistance expression in inoculation tests and the influence of resistance genotypes on the yield. We selected four groups of breeding lines, carrying: (1) the Pch1 gene alone: one line; (2) the Pch2 gene alone: four lines; (3) the Q.Pch.jic-5A gene alone: one line; and (4) Pch1 + Q.Pch.jic-5A: three lines. For the first time, the effect of the combination of Pch1 and Q.Pch.jic-5A genes was compared with resistance conferred by Pch1 or Q.Pch.jic-5A alone. We found significant differences between infection scores evaluated in resistant lines carrying Pch1 and Q.Pch.jic-5A alone, while no differences in terms of the level of resistance expression were detected between Pch1 alone and Pch1 + Q.Pch.jic-5A, and between wheat lines carrying Pch1 and Pch2 alone. Moreover, we demonstrated that the Pch1 gene, together with an Ae. ventricosa segment, caused statistically significant yield losses, both as a single eyespot resistance source or in a combination with Q.Pch.jic-5A. Yield scores showed that wheat lines with Q.Pch.jic-5A had the highest yields, similar to the yielding potential of Pch2-bearing lines and control varieties.
Źródło:
Journal of Plant Protection Research; 2016, 56, 4
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Molecular studies in osteogenesis imperfecta [OI] II. Evaluation of intragenic polymorphic sites in COL1A1 and COL1A2 loci
Autorzy:
Kostyk, E
Sucharski, P.
Pietrzyk, J.J.
Kruczek, A.
Powiązania:
https://bibliotekanauki.pl/articles/2044212.pdf
Data publikacji:
1998
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
intragenic polymorphic site
polymorphism
haplotype
DNA isolation
COL1A1 gene
electrophoresis
collagen
COL1A2 gene
molecular marker
osteogenesis imperfecta
Opis:
The goal of the study was to evaluate intragenic polymorphic sites in COL1A1 and COL1A2 loci. For COL1A1 the following intragenic markers were used: PCR-RFLP (COL1A1), G/A polymorphism in exon 45 of COL1A1 and C/T polymorphism in +88 position of COL1A1 non-translatable 3’ end. For COL1A2 PCR-VNTR was analyzed. 17 families were examined (6 of the "simplex" type and 11 of the "multiple" type). In 8 out of 11 "multiplex" families the segregation of the markers revealed correlation with OI, whereas the other 3 were non-informative. The method was not useful in "simplex" families.
Źródło:
Journal of Applied Genetics; 1998, 39, 4; 349-365
1234-1983
Pojawia się w:
Journal of Applied Genetics
Dostawca treści:
Biblioteka Nauki
Artykuł

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