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Wyszukujesz frazę "phylogenetic analysis" wg kryterium: Temat


Tytuł:
The oldest African eucryptodiran turtle from the Cretaceous of Angola
Autorzy:
Mateus, O.
Jacobs, L.
Polcyn, M.
Schulp, A.S.
Vineyard, D.
Buta Neto, A.
Antunes, M.T.
Powiązania:
https://bibliotekanauki.pl/articles/21522.pdf
Data publikacji:
2009
Wydawca:
Polska Akademia Nauk. Instytut Paleobiologii PAN
Tematy:
Cretaceous
fauna
Africa
eucryptodiran turtle
turtle
Eucryptodira
Angola
paleobiogeography
Turonian
phylogenetic analysis
Opis:
A new Late Cretaceous turtle, Angolachelys mbaxi gen. et sp. nov., from the Turonian (90 Mya) of Angola, represents the oldest eucryptodire from Africa. Phylogenetic analysis recovers Angolachelys mbaxi as the sister taxon of Sandownia harrisi from the Aptian of Isle of Wight, England. An unnamed turtle from the Albian Glen Rose Formation of Texas (USA) and the Kimmeridgian turtle Solnhofia parsonsi (Germany), are successively more distant sister taxa. Bootstrap analysis suggests those four taxa together form a previously unrecognized monophyletic clade of marine turtles, herein named Angolachelonia clade nov., supported by the following synapomorphies: mandibular articulation of quadrate aligned with or posterior to the occiput, and basisphenoid not visible or visibility greatly reduced in ventral view. Basal eucryptodires and angolachelonians originated in the northern hemisphere, thus Angolachelys represents one of the first marine amniote lineages to have invaded the South Atlantic after separation of Africa and South America.
Źródło:
Acta Palaeontologica Polonica; 2009, 54, 4
0567-7920
Pojawia się w:
Acta Palaeontologica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The genus Daphniola Radoman, 1973 (Caenogastropoda: Hydrobiidae) in the Peloponnese, Greece
Autorzy:
Falniowski, A.
Szarowska, M.
Powiązania:
https://bibliotekanauki.pl/articles/83994.pdf
Data publikacji:
2011
Wydawca:
Uniwersytet Mikołaja Kopernika. Wydział Biologii i Ochrony Środowiska. Stowarzyszenie Malakologów Polskich
Tematy:
Daphniola
Caenogastropoda
Hydrobiidae
Peloponnese
Greece
valvatiform
gastropod
mtDNA
anatomy
hydrobiid
protoconch
phylogenetic analysis
Daphniola hadei
reproductive organ
Opis:
A valvatiform hydrobiid gastropod, found in a spring at Dhiaselo, W of Sparta, N. Taigetos Mts., Peloponnese, Greece, was identified as Horatia hadei Gittenberger, 1982. Its protoconch sculpture, female reproductive organs and penis morphology are characteristic of Daphniola Radoman, 1973. Maximum likelihood phylogenetic analysis based on COI (cytochrome oxidase subunit I) fragments of mtDNA proved that the species is congeneric with D. exigua (A. Schmidt, 1856) and D. louisi Falniowski et Szarowska, 2000, and thus belongs to the genus Daphniola, and that D. hadei, D. exigua and D. louisi are species-level distinct taxa.
Źródło:
Folia Malacologica; 2011, 19, 3
1506-7629
Pojawia się w:
Folia Malacologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The first detection of the sequence of bacteria from the Simkaniaceae family in surface waters in Poland
Autorzy:
Pawlikowska-Warych, M.
Deptuła, W.
Powiązania:
https://bibliotekanauki.pl/articles/2087599.pdf
Data publikacji:
2019
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Simkaniaceae
surface water
phylogenetic analysis
OdraWCh30 sequence
Polska
Źródło:
Polish Journal of Veterinary Sciences; 2019, 1; 61-65
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The European Early Cretaceous cryptodiran turtle Chitracephalus dumonii and the diversity of a poorly known lineage of turtles
Autorzy:
Perez-Garcia, A.
Powiązania:
https://bibliotekanauki.pl/articles/21609.pdf
Data publikacji:
2012
Wydawca:
Polska Akademia Nauk. Instytut Paleobiologii PAN
Tematy:
Europe
Lower Cretaceous
cryptodiran turtle
turtle
Chitracephalus dumonii
animal diversity
Testudines
Eucryptodira
Cryptodira
Cretaceous
Belgium
Spain
synonym
paleontology
phylogenetic analysis
systematics
holotype
Salasemys pulcherrima
Opis:
Chitracephalus dumonii was named based on some of the most complete turtle remains from the Lower Cretaceous of Europe, and yet the taxon has barely been mentioned since. Indeed, new specimens were erroneously attributed to a new taxon, “Salasemys pulcherrima”. The synonymy is recognized here, and this extends the geographical range of this turtle and provides examples of individuals at different stages of ontogenetic development. The peculiar structure of its shell, and its ontogenetic development, are unique to this taxon. The systematic position of C. dumonii was previously unclear, usually being referred to Testudinata incertae sedis. Here, it is placed in a cladistic analysis, which shows that C. dumonii, and the recently described Hoyasemys jimenezi form part of a Lower Cretaceous European clade of Cryptodira that includes “macrobaenid”, “sinemydid”, and panchelonioidean turtles.
Źródło:
Acta Palaeontologica Polonica; 2012, 57, 3
0567-7920
Pojawia się w:
Acta Palaeontologica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The brachyopoid Hadrokkosaurus bradyi from the early Middle Triassic of Arizona, and a phylogenetic analysis of lower jaw characters in temnospondyl amphibians
Autorzy:
Ruta, M.
Bolt, J.R.
Powiązania:
https://bibliotekanauki.pl/articles/21195.pdf
Data publikacji:
2008
Wydawca:
Polska Akademia Nauk. Instytut Paleobiologii PAN
Tematy:
brachyopoid
Hadrokkosaurus bradyi
Early Middle Triassic
Triassic
Arizona
phylogenetic analysis
lower jaw
temnospondyl amphibian
amphibian
Temnospondyli
Chigutisauridae
evolution
paleontology
holotype
Opis:
The holotype of the brachyopoid temnospondyl Hadrokkosaurus bradyi, represented by a right lower jaw ramus, is re−examined based upon new data and revision of various morphological features. Additional fragmentary jaw material referred to this species is briefly described. Prominent features are a large postsymphyseal foramen that is anteriorly open, and prearticular and surangular buttresses for support of the articular. Brachyopoid characters include a long and robust postglenoid area formed by surangular and prearticular, anterior and posterior keels on at least some marginal dentary teeth, and subtriangular outline of the adductor fossa in dorsal view. Five features of the holotype ramus, long thought to be at odds with its brachyopoid or temnospondyl nature, are critically re−evaluated. A phylogenetic analysis of lower jaw characters in temnospondyls retrieves most of the clades found in more comprehensive data sets, but the statistical node support is low. Brachyopoids are monophyletic, with Hadrokkosaurus emerging as their most basal taxon.
Źródło:
Acta Palaeontologica Polonica; 2008, 53, 4
0567-7920
Pojawia się w:
Acta Palaeontologica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Systematic Studies on the Hypotrich Ciliate, Tachysoma pellionellum (Müller, 1773) Borror, 1972 (Protozoa, Ciliophora) Based on Integrative Analyses: Morphology, Morphogenesis and Molecular Phylogeny
Autorzy:
Chen, Lingyun
Zhao, Xiaolu
El-Serehy, Hamed A.
Huang, Jie
Clamp, John C.
Powiązania:
https://bibliotekanauki.pl/articles/52405188.pdf
Data publikacji:
2017
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
fresh water ciliate
ontogenesis
phylogenetic analysis
taxonomy
Opis:
Tachysoma pellionellum Stokes, 1887, a freshwater ciliate isolated from Stone Mountain State Park, North Carolina, was studied in vivo and after staining with protargol. The population was characterized mainly by having the typical 18 frontal-ventral-transverse cirri; posterior ends of left and right marginal rows not confluent; five dorsal kineties and one dorsomarginal kinety; two macronuclear nodules near left cell margin with one or two micronuclei between them; contractile vacuole located at mid-body near left margin. Morphogenesis is characterized as follows: (1) in the proter, the parental adoral zone of membranelles is retained completely; (2) 18 frontal-ventral-transverse cirri are derived from the anlage of the undulating membrane and the five streaks of the frontal-ventral-transverse anlagen; (3) marginal rows develop intrakinetally; (4) anlagen of dorsal kineties 1, 2 and 4 develop in the parental structure and anlagen of dorsal kineties 2 and 4 fragment in the posterior region forming anlagen of dorsal kineties 3 and 5; (5) only one dorsomarginal kinety formed; (6) the two macronuclear nodules fuse into a single mass, which then divides. Phylogenetic analyses based on sequences of the gene coding for SSU RNA revealed a close relationship between T. pellionellum and the Oxytricha clade, both of which grouped with Kleinstyla dorsicirrata and Heterourosomoida lanceolata.
Źródło:
Acta Protozoologica; 2017, 56, 4; 221-233
0065-1583
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Structural enzymology at the legume-microbe interface: S-adenosyl-L-homocysteine hydrolase of rhizobia
Autorzy:
Manszewski, T.
Singh, K.
Imiolczyk, B.
Jaskolski, M.
Powiązania:
https://bibliotekanauki.pl/articles/80810.pdf
Data publikacji:
2013
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
S-adenosyl-L-homocysteine hydrolase
rhizobia
biological methylation
methyl group
enzymatic hydrolysis
enzymatic process
crystal structure
phylogenetic analysis
biochemical analysis
legume plant
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2013, 94, 1
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Sequence variants of Yersinia enterocolitica ystB gene detected in wild animals in Poland
Autorzy:
Pieczywek, M.
Bancerz-Kisiel, A.
Szczerba-Turek, A.
Szweda, W.
Powiązania:
https://bibliotekanauki.pl/articles/2087747.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Yersinia enterocolitica
ystB gene
phylogenetic analysis
Źródło:
Polish Journal of Veterinary Sciences; 2018, 21, 2; 397-399
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Problems, limitations, and challenges in species identifcation of Ascomycota members on the basis of ITS regions
Autorzy:
Baturo-Cieśniewska, Anna
Pusz, Wojciech
Patejuk, Katarzyna
Powiązania:
https://bibliotekanauki.pl/articles/11543330.pdf
Data publikacji:
2020
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
Ascomycota
fungi
internal transcribed spacer
molecular identification
polymerase chain reaction
barcode
rDNA
phylogenetic analysis
Opis:
The internal transcribed spacer (ITS) region is regarded as a formal fungal primary barcode with a high probability of the correct identification for a broad group of fungi. ITS sequences have been widely used to determine many fungal species and analysis of rDNA ITS is still one of the most popular tools used in mycology. However, this region is not equally variable in all groups of fungi; therefore, identification may be problematic and result in ambiguous data, especially in some species-rich genera of Ascomycota. For these reasons, identification based on rDNA ITS is usually complemented by morphological observations and analysis of additional genes. Reliable species identification of Ascomycota members is essential in diagnosing plant diseases, verifying air quality and the effectiveness of agronomic practices, or analyzing relationships between microorganisms. Therefore, the present study aimed to verify, using specific examples, the extent to which ITS sequence analysis is useful in species identification of pathogens and saprobionts from Ascomycota and demonstrate problems related to such identification in practice. We analyzed 105 ITS sequences of isolates originating from air and plant material. Basic local alignment search tool (BLASTn) significantly contributed to the reliable species identification of nearly 80% of isolates such as Arthrinium arundinis, Beauveria bassiana, Boeremia exigua, Cladosporium cladosporioides, Epicoccum nigrum, Nigrospora oryzae, Sclerotinia sclerotiorum, or Sordaria fimicola and members of the genera Alternaria and Trichoderma. However, for most isolates, additional morphological observations, information regarding the isolate origin and, where possible, a PCR with species-specific primers were helpful and complementary. Using our practical approach, we determined that ITS-based species identification and comparative analysis with GenBank sequences significantly helps identifying Ascomycota members. However, in many cases, this should be regarded as suggestive of a taxon because the data usually require the use of additional tools to verify the results of such analysis.
Źródło:
Acta Mycologica; 2020, 55, 1; 5512
0001-625X
2353-074X
Pojawia się w:
Acta Mycologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Prevalence and phylogenetic analysis of Fig mosaic virus and Fig badnavirus-1 in Iran
Autorzy:
Alimoradian, M.
Rakhshandehroo, F.
Shams-bakhsh, M.
Powiązania:
https://bibliotekanauki.pl/articles/66369.pdf
Data publikacji:
2016
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
prevalence
phylogenetic analysis
Fig mosaic virus
Fig badnavirus-1
Iran
fig tree
plant disease
Opis:
Fig mosaic virus (FMV) and Fig badnavirus-1 (FBV-1) are two of the most important fig infecting viruses. The incidence and distribution of FBV-1 and FMV were determined by testing in PCR 138 asymptomatic and symptomatic samples. These samples were collected from 60 fig gardens and agricultural fields in three provinces of Iran. The fig infecting viruses FBV-1 and FMV, respectively, were detected in 92 (66.6%) and 34 (24.6%) samples collected from all the surveyed fields. Overall, 24 out of 138 (17.3%) samples showed mixed infections. The sequence analysis of a genomic fragment of 922 nt, comprising the entire ORF-2 and part of the 5’ termini of the ORF-3 of 10 selected FBV-1 Iranian isolates from different provinces, and of the type member from GenBank (Acc. No: JF411989), showed a variation ranging from 1 to 3% at nucleotide level and 1% at the amino acid level. The phylogenetic analysis grouped the FBV-1 isolates into two groups, with the Iranian isolates clustered in two distinct subgroups of group I, according to their geographical origin. In our research, the prevalence and sequence analysis of FBV-1 as the only identified DNA virus infecting fig trees, was studied for the first time in Iran.
Źródło:
Journal of Plant Protection Research; 2016, 56, 2
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic Characters in the Humerus and Tarsometatarsus of Penguins
Autorzy:
Hoffmeister, Martín Chávez
Powiązania:
https://bibliotekanauki.pl/articles/2051142.pdf
Data publikacji:
2014
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Sphenisciformes
limb bones
phylogenetic analysis
parsimony method
revised dataset
Źródło:
Polish Polar Research; 2014, 3; 469-496
0138-0338
2081-8262
Pojawia się w:
Polish Polar Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analysis of swine influenza viruses isolated in Poland
Autorzy:
Kowalczyk, A
Markowska-Daniel, I.
Powiązania:
https://bibliotekanauki.pl/articles/30634.pdf
Data publikacji:
2010
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
pig
animal population
European population
swine influenza virus
H1N1 subtype
H3N3 subtype
phylogenetic analysis
isolation
Polska
Opis:
Swine influenza virus (SIV) of H1N1 and H3N2 subtypes are dominated in European pigs population. "Classical swine" H1N1 subtype was replaced by "avian-like" H1N1 subtype. It co-cir- culates with H3N2 reassortant possessing "avian" genes. In the present study, 41 SIV strains isolated from pigs with pneumonia, raised in 20 Polish farms, were identified and characterised. Since it was evidenced that isolates from the same geographic district and the same year of isolation are in 100% similar, 15 strains representing different district and different year of isolation were chosen to construct phylogenetic trees. Two genes, conservative matrix 1 (Ml) and the most variable, haemagglutynin (HA), were sequenced and subjected into phylogenetic analysis. The results of the analysis confirmed that "avian-like" swine H1N1 strains evolved faster than classical SIV strains. HA gene of these isolates have been derived from contemporary strains of "avian-like" SIV. In contrast, the Ml gene segment may have originated from avian influenza viruses. H3N2 strain is located in swine cluster, in the main prevalent European group of H3N2 isolates called A/Port Chalmers/l/73-like Eurasian swine H3N2 lineage, which has evolved separately from the human H3N2 virus lineage around 1973.
Źródło:
Polish Journal of Veterinary Sciences; 2010, 13, 1; 37-44
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analysis of PDV movement protein compared to Bromoviridae members as justification of possible intercellular movement
Autorzy:
Koziel, E..
Otulak, K.
Garbaczewska, G.
Powiązania:
https://bibliotekanauki.pl/articles/19748.pdf
Data publikacji:
2015
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
phylogenetic analysis
prune dwarf virus
protein
Bromoviridae
justification
movement protein
amino acid sequence
Źródło:
Acta Biologica Cracoviensia. Series Botanica; 2015, 57, 2
0001-5296
Pojawia się w:
Acta Biologica Cracoviensia. Series Botanica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analysis and genetic structure of new isolates of Tomato mosaic virus in Iran
Autorzy:
Rakhshandehroo, F.
Hashemi, S.S.
Shahraeen, N.
Powiązania:
https://bibliotekanauki.pl/articles/961661.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
phylogenetic analysis
genetic structure
new isolate
tomato mosaic virus
genetic differentiation
genetic variation
phylogenetic tree
Tobamovirus
Iran
Opis:
The present report describes the new occurrence of Tomato mosaic virus (ToMV) in cabbage, bean and Malva neglecta plants in Iran. In this study, sequence analyses of a partial RNA dependent RNA polymerases (RdRp) and complete movement protein (MP) and the coat protein (CP) nucleotide sequences of three new ToMV isolates collected from major crop fields in Iran revealed low genetic variation of RdRp gene compared to the CP and MP genes. The different topologies of the phylogenetic trees constructed, using available open reading frame (ORF1), ORF2 and ORF3 sequences from ToMV isolates, indicated different evolutionary constraints in these genomic regions. Statistical analysis also revealed that with the exception of CP other tested ToMV genes were under negative selection and the RdRp gene was under the strongest constraints. According to the phylogenetic tree it can be inferred from the nucleotide sequences of the complete CP and MP genes, that isolates from Iran and Egypt formed separate groups, irrespective of host origin. However, isolates clustered into groups with correlation to geographic origin but not the host. Analysis of the Ks*, Z* and Snn values also indicated genetic differentiation between ToMV populations. The Tajima’s D, Fu and Li’s statistical values were significantly negative for the RdRp gene of the Asian population which suggests the sudden expansion of ToMV in Asia. Taken together, the results indicate that negative selection and genetic drift were important evolutionary factors driving the genetic diversification of ToMV.
Źródło:
Journal of Plant Protection Research; 2018, 58, 1
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analyses of Bartonella sp. (Bacteria) of rodents from four separated valleys in Sinai Mountains (Egypt)
Autorzy:
Alsarraf, M.
Mohallal, E.M.
Kwiatowski, J.
Mierzejewska, E.J.
Welc-Faleciak, R.
Behnke, J.M.
Bajer, A.
Powiązania:
https://bibliotekanauki.pl/articles/6477.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Parazytologiczne
Tematy:
phylogenetic analysis
Bartonella
bacteria
rodent
valley
Sinai Mount
Egypt
Źródło:
Annals of Parasitology; 2016, 62, Suppl.
0043-5163
Pojawia się w:
Annals of Parasitology
Dostawca treści:
Biblioteka Nauki
Artykuł

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