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Wyszukujesz frazę "multiple alignment" wg kryterium: Temat


Wyświetlanie 1-6 z 6
Tytuł:
Application of genetic semihomology algorithm to theoretical studies on various protein families.
Autorzy:
Leluk, Jacek
Hanus-Lorenz, Beata
Sikorski, Aleksander
Powiązania:
https://bibliotekanauki.pl/articles/1044159.pdf
Data publikacji:
2001
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
multiple alignment
cryptic mutations
genetic semihomology
sequence consensus
Opis:
Several protein families of different nature were studied for genetic relationship, correct alignment at non-homologous fragments, optimal sequence consensus construction, and confirmation of their actual relevance. A comparison of the genetic semihomology approach with statistical approaches indicates a high accuracy and cognition significance of the former. This is particularly pronounced in the study of related proteins that show a low degree of homology. The sequence multiple alignments were verified and corrected with respect to the questionable, non-homologous fragments. The verified alignments were the basis for consensus sequence formation. The frequency of six-codon amino acids occurrence versus position variability was studied and their possible role in amino acid mutational exchange at variable positions is discussed.
Źródło:
Acta Biochimica Polonica; 2001, 48, 1; 21-33
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Correlated mutations in selected protein families
Autorzy:
Leluk, J.
Sobczyk, M.
Becella, Ł.
Powiązania:
https://bibliotekanauki.pl/articles/1986920.pdf
Data publikacji:
2002
Wydawca:
Politechnika Gdańska
Tematy:
protein sequence
multiple alignment
tertiary structure
mutational correlation
genetic semihomology algorithm
Opis:
Four different protein families (two proteinase inhibitor families, myoglobins and lysozymes) were surveyed for correlated mutations with respect to the position distance and their significance in structure stabilization and biological activity. They were chosen for this study in order to verify the currently admitted model of mutational correlation relationship with respect to spatial contact of the residues and contribution in protein biological activity. There was observed high contribution of spatially dispersed residues (which are also not involved in the protein active center) in mutational correlation. Because of the significantly large distance between correlated positions these cases do not correspond explicitly to any mechanism included in current hypotheses. It is suggested that the role of residue spatial contact in structure preservation, intermolecular interaction and active site rescue mechanisms only partially explains the correlation phenomenon.
Źródło:
TASK Quarterly. Scientific Bulletin of Academic Computer Centre in Gdansk; 2002, 6, 3; 469-482
1428-6394
Pojawia się w:
TASK Quarterly. Scientific Bulletin of Academic Computer Centre in Gdansk
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Some remarks on evaluating the quality of the multiple sequence alignment based on the BAliBASE benchmark
Autorzy:
Błażewicz, J.
Formanowicz, P.
Wojciechowski, P.
Powiązania:
https://bibliotekanauki.pl/articles/930013.pdf
Data publikacji:
2009
Wydawca:
Uniwersytet Zielonogórski. Oficyna Wydawnicza
Tematy:
dostosowanie odniesienia
dokładność ustawienia
multiple sequence alignment
reference alignment
alignment accuracy
Opis:
BAliBASE is one of the most widely used benchmarks for multiple sequence alignment programs. The accuracy of alignment methods is measured by bali score-an application provided together with the database. The standard accuracy measures are the Sum of Pairs (SP) and the Total Column (TC). We have found that, for non-core block columns, results calculated by bali score are different from those obtained on the basis of the formal definitions of the measures. We do not claim that one of these measures is better than the other, but they are definitely different. Such a situation can be the source of confusion when alignments obtained using various methods are compared. Therefore, we propose a new nomenclature for the measures of the quality of multiple sequence alignments to distinguish which one was actually calculated. Moreover, we have found that the occurrence of a gap in some column in the first sequence of the reference alignment causes column discarding.
Źródło:
International Journal of Applied Mathematics and Computer Science; 2009, 19, 4; 675-678
1641-876X
2083-8492
Pojawia się w:
International Journal of Applied Mathematics and Computer Science
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Motifs of the caldesmon family.
Autorzy:
Czuryło, Edward
Powiązania:
https://bibliotekanauki.pl/articles/1044222.pdf
Data publikacji:
2000
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
secondary structure prediction
caldesmon
binding sites
conserved sequences
multiple sequence alignment
Opis:
Seven highly conserved regions were found in caldesmon molecules from various sources using the multiple sequence alignment method. Their localization coincides with regions where the binding sites to other proteins were postulated. Less conserved and highly divergent regions of the sequences are described as well. These results could refine the planning of caldesmon gene manipulations and accelerate the precise localization of binding sites in the caldesmon molecule and, as a consequence, this could help to elucidate its function in smooth muscle contraction.
Źródło:
Acta Biochimica Polonica; 2000, 47, 4; 1019-1026
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
MIPS sequences: a promising molecular consideration in angiosperm phylogeny and systematics
Autorzy:
Hazra, A.
Nandy, P.
Sengupta, C.
Das, S.
Powiązania:
https://bibliotekanauki.pl/articles/80785.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
myo-inositol-1-phosphate synthase
protein sequence
angiosperm
phylogenesis
maximum likelihood method
multiple sequence alignment
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2018, 99, 1
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
A novel approach for identifying DNA repair pathways proteins using an evolutionary approach: Plasmodium falciparum case study
Autorzy:
Milanowska, K.
Wojtczak, J.
Powiązania:
https://bibliotekanauki.pl/articles/80413.pdf
Data publikacji:
2016
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
DNA repair
pathway
ortholog
pipeline
Plasmodium falciparum
proteomics
protein
profile analysis
Hidden Markov model
multiple sequence alignment
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2016, 97, 4
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
    Wyświetlanie 1-6 z 6

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