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Tytuł:
Intra-population genetic diversity of cultivated carrot (Daucus carota L.) assessed by analysis of microsatellite markers
Autorzy:
Maksylewicz, Anna
Baranski, Rafal
Powiązania:
https://bibliotekanauki.pl/articles/1039480.pdf
Data publikacji:
2013
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
SSR
biodiversity
genetic structure
gene pool
Opis:
Intra-population variation of 18 cultivated carrot (Daucus carota L. ssp. sativus) populations of diverse origins was evaluated using codominant microsatellite (SSR) markers. Using 27 genomic and EST-derived SSR markers, 253 alleles were identified with a mean 9.4 alleles per marker. Most of the alleles (60.5%) were rare i.e., with the frequency ≤ 0.05 while only 3.95% of alleles occurred with frequency > 0.6. EST-derived SSR markers were less polymorphic than genomic SSR markers. Differences in allele occurrence allowed 16 out of 18 populations to be assigned to either the Western or Asian carrot gene pools with high probability. Populations could be also discriminated due to the presence of private alleles (25.3% of all alleles). Most populations had excess of alleles in the homozygous state indicating their inbreeding, although heterozygous loci were common in F1 hybrids. Genetic diversity was due to allelic variation among plants within populations (62% of total variation) and between populations (38%). Accessions originating from continental Asia and Europe had more allelic variants and higher diversity than those from Japan and USA. Also, allelic richness and variability in landraces was higher than in F1 hybrids and open-pollinated cultivars.
Źródło:
Acta Biochimica Polonica; 2013, 60, 4; 753-760
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genetic status of Polish larch (Larix decidua subsp. polonica (Racib. Domin)) from Chełmowa Mountain: implications for gene conservation
Autorzy:
Litkowiec, M.
Lewandowski, A.
Burczyk, J.
Powiązania:
https://bibliotekanauki.pl/articles/2078281.pdf
Data publikacji:
2021
Wydawca:
Polska Akademia Nauk. Instytut Dendrologii PAN
Tematy:
European larch
genetic diversity
microsatellites
spatial genetic structure
Opis:
The Polish larch (Larix decidua subsp. polonica (Racib. Domin), a subspecies of European larch, is one of the most valuable forest-forming trees in Poland. It was first discovered on the Chełmowa Mountain where Natural Reserve has been established to protect this subspecies. Currently, this unique population is at risk of extinction. Nonetheless, the knowledge on the genetic diversity of this population and surround- ing larch forests is insufficient to undertake actions aimed at conservation of genetic resources. In this study, we examined the level of genetic diversity and differentiation of four subpopulations of Polish larch from Nature Reserve on the Chełmowa Mountain and surrounding areas. We used eleven nuclear microsatellite markers (SSRs) combined in two multiplex PCR reactions. In total, 344 individuals of Polish larch were genotyped and subjected to further population genetic analyses. We found the high level of genetic diversity (average: He = 0.752, Ho = 0.720) and low levels of genetic differentiation (average: Fst = 0.022). The effective population size was large and homogeneous across subpopulations (mean Ne=90.7), and we found no sign of inbreeding. The spatial genetic structure was detected in two older subpopulations but not in the younger one, suggesting its artificial origin. The old larch subpopulations were genetically homogeneous and they were related to the ancestral group of Polish lowland populations. The old larch core populations growing on Chełmowa Mountain are relatively homogeneous and they well represent the ancestral genetic group of Polish lowland larch populations. However, they still exhibit rela- tively high genetic diversity and sufficiently large effective population sizes assuring their adaptive potential for a long-term existence. Surrounding larch populations are even more genetically diverse but this might be the effect of an admixture of seed sources from various populations from a wider area of Central Europe. We recommend that specific conservation efforts should be undertaken to promote natural regeneration of the core larch populations, even supplemented by the planting of seedlings derived from the oldest larch trees. Other management actions should focus on limiting external gene flow to this unique population of Polish larch.
Źródło:
Dendrobiology; 2018, 80; 101-111
1641-1307
Pojawia się w:
Dendrobiology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The local populations of the fungus Schizophyllum commune Fr. as drivers of its biodiversity
Autorzy:
Boiko, Sergiy
Powiązania:
https://bibliotekanauki.pl/articles/2040907.pdf
Data publikacji:
2021
Wydawca:
Instytut Badawczy Leśnictwa
Tematy:
Schizophyllum commune
gene drift
genetic structure
local populations
terrain
Opis:
Changes that occur on the local level can explain the processes on the population level and, at the same time, are the driving force of species adaptation. This manuscript reports data about genetic diversities of the fungus Schizophyllum commune on the level of a local population. Objects of the study were dicarious cultures of S. commune collected from 38 basidiocarps grown on the territory of Holosiivskyi National Nature Park, Lysa Hora Regional Landscape Park and Feofaniya forest parcel (Ukraine). Results showed similarity of genetic variability of S. commune in different local populations. The heterozygote deficiency of some loci that was discovered might have resulted from new forms of allozymes that have not become widespread or due to small population sizes. The degree of differentiation of genes between local studied populations was moderate due to the high flow of genes. The absence of spatial structuration of genotypes is established, and the Mantel test showed a lack of interconnection between the genetic component and the geographical coordinates of the samples. It has been suggested that wind direction and terrain are the factors that influence the genetic structure of local populations.
Źródło:
Folia Forestalia Polonica. Series A . Forestry; 2021, 63, 4; 308-316
0071-6677
Pojawia się w:
Folia Forestalia Polonica. Series A . Forestry
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Evaluation of changes in the genetic structure of Hucul horses based on the analysis of I type of genetic markers
Ocena zmian w strukturze genetycznej koni huculskich na podstawie analizy markerów genetycznych klasy I
Autorzy:
Nogaj, A.
Nogaj, J.
Kozubska-Sobocińska, A.
Rychlik, T.
Powiązania:
https://bibliotekanauki.pl/articles/2196899.pdf
Data publikacji:
2013
Wydawca:
Uniwersytet Przyrodniczy w Lublinie. Wydawnictwo Uniwersytetu Przyrodniczego w Lublinie
Tematy:
genetic structure
structural change
Hucul breed
horse
genetic marker
antigen
polymorphic protein
Źródło:
Annales Universitatis Mariae Curie-Skłodowska. Sectio EE: Zootechnica; 2013, 31, 2; 39-48
0239-4243
2083-7399
Pojawia się w:
Annales Universitatis Mariae Curie-Skłodowska. Sectio EE: Zootechnica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Association of HindIII-polymorphism in kappa-casein gene with milk, fat and protein yield in holstein cattle
Autorzy:
Miluchová, Martina
Gábor, Michal
Candrák, Juraj
Trakovická, Anna
Candráková, Kristína
Powiązania:
https://bibliotekanauki.pl/articles/1038368.pdf
Data publikacji:
2018
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
Holstein cattle
milk production
CSN3
kappa-casein
genetic structure
Opis:
The aim of this paper was to evaluate the effect of genetic polymorphism of kappa-casein on milk production in Holstein cattle. Two hundred and ten Holstein cows were used in this study. We established genotype structure of cattle population and calculated allelic frequencies based on PCR-RFLP analyses. The three genotypes: AA (69.52%), AB (27.62%), and BB (2.86%) were detected. Frequency of allele A was 83.33%, and of allele B 16.67%. The Holstein cattle kept in Slovak Republic exhibit a high value of homozygosity (0.7222) and low values of polymorphism information content (0.2392), effective number of alleles (1.3847) and level of possible variability realization (27.91%). The effect of polymorphism of CSN3 gene on average breeding values for milk production traits, such as yield of milk, fat and protein expressed in kilograms, as well as percentage content of fat and protein in milk, has been assessed. In our assessment of the observed traits' variability's dependence on CSN3 gene polymorphism, we detected a statistically significant difference between genotypes only in case of the average breeding value for the percentage of protein in milk.
Źródło:
Acta Biochimica Polonica; 2018, 65, 3; 403-407
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analysis and genetic structure of new isolates of Tomato mosaic virus in Iran
Autorzy:
Rakhshandehroo, F.
Hashemi, S.S.
Shahraeen, N.
Powiązania:
https://bibliotekanauki.pl/articles/961661.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
phylogenetic analysis
genetic structure
new isolate
tomato mosaic virus
genetic differentiation
genetic variation
phylogenetic tree
Tobamovirus
Iran
Opis:
The present report describes the new occurrence of Tomato mosaic virus (ToMV) in cabbage, bean and Malva neglecta plants in Iran. In this study, sequence analyses of a partial RNA dependent RNA polymerases (RdRp) and complete movement protein (MP) and the coat protein (CP) nucleotide sequences of three new ToMV isolates collected from major crop fields in Iran revealed low genetic variation of RdRp gene compared to the CP and MP genes. The different topologies of the phylogenetic trees constructed, using available open reading frame (ORF1), ORF2 and ORF3 sequences from ToMV isolates, indicated different evolutionary constraints in these genomic regions. Statistical analysis also revealed that with the exception of CP other tested ToMV genes were under negative selection and the RdRp gene was under the strongest constraints. According to the phylogenetic tree it can be inferred from the nucleotide sequences of the complete CP and MP genes, that isolates from Iran and Egypt formed separate groups, irrespective of host origin. However, isolates clustered into groups with correlation to geographic origin but not the host. Analysis of the Ks*, Z* and Snn values also indicated genetic differentiation between ToMV populations. The Tajima’s D, Fu and Li’s statistical values were significantly negative for the RdRp gene of the Asian population which suggests the sudden expansion of ToMV in Asia. Taken together, the results indicate that negative selection and genetic drift were important evolutionary factors driving the genetic diversification of ToMV.
Źródło:
Journal of Plant Protection Research; 2018, 58, 1
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genetic analysis of silver-fir populations in the Beskids
Autorzy:
Mejnartowicz, L
Powiązania:
https://bibliotekanauki.pl/articles/58866.pdf
Data publikacji:
2003
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
silver fir population
Abies alba
genetic distance
isoenzyme
Beskids Mountains
genetic structure
heterozygosity
genetic analysis
genetic diversity
population
genetic variation
Opis:
Twenty-eight isozymic loci were studied in the Beskid Mts., in four populations of common silver-fir (Abies alba): one in Beskid Makowski (BM) and three populations in Beskid Sądecki (BS). Their genetic variation and diversity were analyzed, and Nei's genetic distances between the populations were calculated. The results show that the geographical distance between the BM population and the three BS populations is reflected in genetic distances. The BM population is clearly distinct from the others. It has the lowest genetic diversity (I = 0.42), percentage of polymorphic loci (%PoL = 64.29) and number of rare alleles (NoRa = 5). Besides, the BM population has the highest observed heterozygosity (Ho = 0.291), which exceeds the expected heterozygosity (He = 0.254), estimated on the basis of the Hardy-Weinberg Principle. On the contrary, BS populations are in the state of equilibrium, which is manifested, in similar values of He = 0.262 and Ho = 0.264.
Źródło:
Acta Societatis Botanicorum Poloniae; 2003, 72, 2
0001-6977
2083-9480
Pojawia się w:
Acta Societatis Botanicorum Poloniae
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genetic structure of Norway spruce [Picea abies (L.) Karst.] provenances tested in IPTNS-IUFRO 1964/68 experiment in Krynica
Autorzy:
Sabor, J.
Kempf, M.
Masternak, K.
Powiązania:
https://bibliotekanauki.pl/articles/38295.pdf
Data publikacji:
2013
Wydawca:
Instytut Badawczy Leśnictwa
Tematy:
genetic structure
Norway spruce
Picea abies
isoenzyme
polymorphism
seed source
genetic distance
experiment
Krynica-Zdroj town
Opis:
The results of previous studies have shown high breeding values of Beskidian spruce. The aim of the study was to assess the genetic structure of seventeen Norway spruce provenances from the Beskidy Mts. tested in IPTNSIUFRO 1964/68 experiment in Krynica, which survived after massive wind damage on the plots. Polymorphism of five isozyme systems encoded in five loci was determined. The highest value of genetic diversity parameters: mean number of alleles per locus and observed heterozygosity was noted for progeny of spruce from the Eastern Beskidy Mts. (Na = 1.47, Ho = 0.15), and the lowest – for the provenance from the Western Beskidy Mts., Babia Góra massif and the Beskid Sądecki Mts. (Na = 1.27, Ho = 0.12). Mean genetic distance between analyzed spruce provenances was equal to 0.027.
Źródło:
Folia Forestalia Polonica. Series A . Forestry; 2013, 55, 1
0071-6677
Pojawia się w:
Folia Forestalia Polonica. Series A . Forestry
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genetic diversity of wild Thymus capitatus (Lamiaceae) in Tunisia using molecular markers
Autorzy:
Ben El Hadj Ali, I.
Guetat, A.
Boussaid, M.
Powiązania:
https://bibliotekanauki.pl/articles/41663.pdf
Data publikacji:
2012
Wydawca:
Polska Akademia Nauk. Instytut Dendrologii PAN
Tematy:
genetic diversity
wild plant
Thymus capitatus
Lamiaceae
Tunisia
molecular marker
habitat fragmentation
conservation strategy
genetic structure
Opis:
In Tunisia, Thymus capitatus L. populations are severely destroyed due to deforestation and over-collecting. The species occurs in small scattered populations decreasing progressively in size. Yet, no conservation or improvement programs are attempted to preserve and promote the potential value of this resource. In this work, we assessed the genetic diversity of nine Tunisian populations of Thymus capitatus L. from different bioclimates, using 103 polymorphic randomly amplified polymorphic DNA (RAPD) loci. The analysis of the genetic variation within and among populations is primordial to elaborate conservation and improvement programs. The species showed a low diversity within populations (0.276
Źródło:
Dendrobiology; 2012, 68
1641-1307
Pojawia się w:
Dendrobiology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Cochlearia polonica Frohl. (Brassicaceae), a narrow endemic species of southern Poland: history of conservation efforts, overview of current population resources and genetic structure of populations
Autorzy:
Cieslak, E.
Kazmierczakowa, R.
Ronikier, M.
Powiązania:
https://bibliotekanauki.pl/articles/56510.pdf
Data publikacji:
2010
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
Cochlearia polonica
Brassicaceae
endemic species
Southern Poland
history
conservation effort
current population
population resource
genetic structure
genetic variation
population structure
Opis:
Cochlearia polonica Fröhl. (Brassicaceae) is one of the rarest species in the Polish and European flora and a taxon endemic to a very small area in southern Poland. Due to industrial activities and subsequent transformation of habitats it was extinct in all natural localities around 1994. The persistence of the species was ensured thanks to the active protection efforts including a series of transplantations based on the material from the last and decreasing natural population. The history of conservation efforts of C. polonica provides a model example of successful active protection in the European flora. Here, we provide a complete review comprising the following aims: (i) outline of the discovery and taxonomic conceptions on C. polonica, (ii) review of conservation efforts aimed at preserving its populations, (iii) description of the existing population resources, and (iv) analysis of the genetic structure of all existing populations based on previously published data and new, supplementary results.
Źródło:
Acta Societatis Botanicorum Poloniae; 2010, 79, 3
0001-6977
2083-9480
Pojawia się w:
Acta Societatis Botanicorum Poloniae
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Analysis of genetic structure of Silesian horses from Ksiaz National Stud
Analiza struktury genetycznej populacji koni śląskich ze Stada Ogierów Książ
Autorzy:
Kania-Gierdziewicz, J.
Galka, E.
Gierdziewicz, M.
Powiązania:
https://bibliotekanauki.pl/articles/2654.pdf
Data publikacji:
2018
Wydawca:
Szkoła Główna Gospodarstwa Wiejskiego w Warszawie. Wydawnictwo Szkoły Głównej Gospodarstwa Wiejskiego w Warszawie
Tematy:
Ksiaz Stallion Herd
horse
Silesian breed
animal breeding
inbreeding
animal genetics
genetic structure
genetic analysis
genetic variability
active population
Opis:
Analysis of genetic structure of Silesian horses from National Stud. The aim of the study was to analyze the genetic composition of Silesian horses bred in "Książ" National Stud basing on their pedigreesand to try to answer the following question: is the subdivision of Silesian horse population really necessary to prevent local horse breed? As the material 72 pedigrees of brood mares and stallions, born between 1991 and 2009 were used. On average, 93.1% of animals were inbred, there were 96.55% inbred stallions and 90.70% inbred mares. The mean inbreeding coefficient for all horses was 2.3%, for inbred horses it reached 2.5%. There were more inbred mares (39) than stallions (28). All 72 Silesian horses from "Książ" State Stud were related with the average relationship coefficient of 8.5%. The total and effective number of founders were 458 and 163, respectively. The total andeffective number of ancestors were 64 and 22, respectively. Among the founding breeds Thoroughbred horses predominated, the next were Oldenburg and Silesian horses, whereas among ancestors there were much more Silesian horses than Thorougbreds. All in all, the genetic diversity of the Silesian horses from "Książ" National Stud was satisfactory, however its monitoring is required because of both upward inbreeding and 100% related animals. Because the population of Silesian horses is small, less than 2,000 animals and sligtly over 1,000 animals included in conservation programme, the artifical subdivision of this population as proposed in the new breeding programme, which would result in creation of two subpopulations: “old-type” and “new-type” Silesian horses, is not recommended. For maintaining genetic diversity, it could be also possible to carefully import of semen or stallions of similar breeds, i.e. German Alt-Oldenburger horses or German Heavy Warmblood horses. The plan should also include the matings recommended within the population of all available Silesian horses of both types. The authors consider introducing such a program essential. It should be also clearly stated in the plan how large proportion of the Silesian mares population could be each year mated to Thoroughbredstallions. Division into two types implies that some fraction of new-type Silesian horses and their progeny would not be regarded as potential parents of individuals for the conservation programme.
Analiza struktury genetycznej populacji koni śląskich z SO Ksiaż. Celem pracy była analiza struktury genetycznej koni rasy śląskiej hodowanych w Stadzie Ogierów Książ na podstawie danych rodowodowych oraz wypracowanie odpowiedzi na pytanie: czy słuszny jest założony w Programie hodowlanym koni rasy śląskiej podział na stary i nowy typ konia śląskiego z osobnymi wymogami dotyczącymi wpisu do ksiąg. Materiał: rodowody 72 koni zakwalifikowanych jako konie hodowlane (populacja aktywna). Populacją referencyjną do analiz stanowiły 72 konie należące do populacji aktywnej urodzone w latach 1991-2009. Udział osobników zinbredowanych w populacji aktywnej wynosił 93,1%, przy czym więcej było zinbredowanych ogierów niż klaczy. Średnie zinbredowanie dla wszystkich koni wynosiło 2,3%, natomiast w grupie koni zinbredowanych było równe 2,5%. Bardziej zinbredowane były klacze niż ogiery. Wszystkie badane 72 konie śląskie były ze sobą spokrewnione a średni współczynnik spokrewnienia dla nich = 8,5%. Ogólna liczba założycieli wyniosła 458, zaś przodków – 64. Efektywna liczba założycieli wynosiła 163 a przodków – 22. Wśród ras założycielskich przeważała pełna krew angielska, a następnie konie oldenburskie i śląskie. Wśród przodków występowały przeważnie konie śląskie, a udział koni pełnej krwi był niewielki. Ogólnie można stwierdzić, że zmienność genetyczna wśród koni śląskich ze SO Książ pozostaje jeszcze na zadowalająco dobrym poziomie, ale wymaga monitorowania ze względu na tendencję do wzrostu inbredu przy jednoczesnym spokrewnieniu wszystkich osobników. Ze względu na małą liczebność populacji koni śląskich (poniżej 2000 osobników, w tym nieco ponad 1000 osobników w programie ochrony zasobów genetycznych rasy) wprowadzenie bardziej restrykcyjnego podziału na dwie subpopulacje koni starego i nowego typu będzie dla rasy bardzo niekorzystne. Aby utrzymać zmienność genetyczną koni śląskich na zadowalającym poziomie korzystne byłoby również posłużenie się reproduktorami ras mających te same korzenie co rasa śląska, np. Oldenburgami w starym typie czy końmi rasy ciężkiej gorącokrwistej niemieckiej. Wprowadzenie indywidualnego planu kojarzeń w obrębie całej populacji koni śląskich jest, według autorów, niezbędne. Plan taki powinien jasno określić jaka część populacji klaczy śląskich corocznie mogłaby być ewentualnie krzyżowana z ogierami pełnej krwi angielskiej. Powinien on uwzględniać, jako sugestie dla hodowców, możliwości kojarzeń w obrębie całej dostępnej populacji koni śląskich bez podziałów na stary i nowy typ. Podział taki powoduje, że pewna część koni śląskich nowego typu i ich potomstwo nie jest brana pod uwagę jako ewentualni rodzice koni, które będą spełniały warunki programu ochrony. Na przykład pozwoliłoby to wykorzystać konie śląskie nowego typu, u których udział genów rasy śląskiej jest większy niż 75%, i które stworzyłyby „grupę wstępną programu ochrony". Ich kojarzenie z końmi starego typu mogłyby dać potomstwo (dzieci, wnuki), które spełniały by w przyszłości warunki programu ochrony, powiększając tym samym dostępną pulę genów.
Źródło:
Annals of Warsaw University of Life Sciences - SGGW. Animal Science; 2018, 57[1]
1898-8830
Pojawia się w:
Annals of Warsaw University of Life Sciences - SGGW. Animal Science
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
AFLP analysis reveals infraspecific phylogenetic relationships and population genetic structure of two species of Aconitum in Central Europe
Autorzy:
Mitka, J.
Boron, P.
Wroblewska, A.
Baba, W.
Powiązania:
https://bibliotekanauki.pl/articles/59372.pdf
Data publikacji:
2015
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
AFLP method
phylogenetic relationship
population structure
genetic structure
Aconitum
taxonomy
population genetics
evolution
Sudetes Mountains
Central Europe
Opis:
The genetic diversity of two Aconitum species endemic to the Carpathian Mountains and Sudetes was studied. A reticulate evolution between them was earlier postulated as an effect of secondary contact. The genetic diversity at the individual and taxonomic levels was examined across the entire geographical ranges of the taxa in 11 populations based on 247 AFLP markers found in 112 individuals in the Sudetes and Western Carpathians. The overall genetic differentiation was greater within the Sudetic A. plicatum (Fst = 0.139, P < 0.001) than within the Carpathian A. firmum (Fst = 0.062, P < 0.001), presumably due to the long-lasting geographic isolation between the Giant Mts and Praděd (Sudetes) populations of the species. Interestingly, relatively distant and presently isolated populations of A. plicatum and A. f. subsp. maninense share a part of their genomes. It could be an effect of their common evolutionary history, including past and present reticulations. The introgression among infraspecific taxa of Aconitum is common, probably as a result of seed dispersal within a distance of ca. 20 km (Mantel's r = 0.36, P = 0.01). Aconitum f. subsp. maninense had the highest genetic diversity indices: Nei's h and rarefied FAr, and divergence index DW (P < 0.05), pointing to its presumably ancient age and long-term isolation.
Źródło:
Acta Societatis Botanicorum Poloniae; 2015, 84, 2
0001-6977
2083-9480
Pojawia się w:
Acta Societatis Botanicorum Poloniae
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Low genetic diversity in the endangered population of Viola uliginosa in its locus classicus at Rzaska near Cracow [southern Poland] as revealed by AFLP markers
Autorzy:
Cieslak, E
Paul, W.
Ronikier, M.
Powiązania:
https://bibliotekanauki.pl/articles/58111.pdf
Data publikacji:
2006
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
genetic diversity
endangered population
Viola uliginosa
Rzaska n.Krakow
Polska
AFLP marker
plant conservation
rare plant
threatened plant
wet habitat
genetic structure
population structure
Opis:
An extremely endangered population of Viola uliginosa Besser at the classical locality of this taxon has been studied. The AFLP analysis was based on 18 specimens of V. uliginosa (about 10% of preserved individuals); additionally, two individuals of V. riviniana were included in the data set as the out group. A high genetical uniformity of the whole population (similarity indexes close to 1) was detected. It was not correlated significantly with the spatial distribution of the plants. The study serves as a basis for practical conservation measures and at the same time as a starting point for a more extensive research on the genetical variability of the species throughout its range.
Źródło:
Acta Societatis Botanicorum Poloniae; 2006, 75, 3; 245-251
0001-6977
2083-9480
Pojawia się w:
Acta Societatis Botanicorum Poloniae
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Differentiation and genetic structure of Sclerophoma pythiophila (Corda) v. Hoehn. strains associated with various damage and disease symptoms on Pinus sylvestris L.
Zróżnicowanie i struktura genetyczna szczepów Sclerophoma pythiophila (Corda) v. Hoehn. związanych z różnymi typami objawów chorobowych i uszkodzeń na Pinus sylvestris L.
Autorzy:
Kraj, W.
Kowalski, T.
Zarek, M.
Powiązania:
https://bibliotekanauki.pl/articles/27447.pdf
Data publikacji:
2009
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
differentiation
genetic structure
Sclerophoma pythiophila
fungal strain
fungi association
damage
plant disease
disease symptom
Pinus sylvestris
Contarinia baeri
Thecodiplosis brachyntera
Opis:
Eighty-three strains of Sclerophoma pythiophila were isolated in the period between 1996 and 2006 from needles and shoots of Pinus sylvestris displaying various types of disease symptoms or damages caused by Contarinia baeri or Thecodiplosis brachyntera. On the basis of fifty-six RAMS markers, very high genetic variability of examined strains was ascertained (mean value of Jaccard’s coefficient 0.58). The highest genetic similarity was shown by strains related with needles damaged by Contarinia baeri (0.65), whereas the lowest by those derived from dead shoot tips (0.53). No monomorphic markers were found for individual groups of strains, yet on the basis of Nei’s genetic distance matrix, it was possible to determine a group of closely related fungus populations which was connected with the damaging of the needles by C. baeri or T. brachyntera (Nei’s coefficient ranging from 0.035 to 0.059) and populations related with the occurrence of necrosis on shoots or decay of their tips (Nei’s coefficient – 0.066). The PCA confirmed genetic similarity of strains related with damaging of the needles by insects and strains isolated from local necroses on shoots and withered shoot tips. A high level of genetic variability between populations was shown by AMOVA analysis. A high level (14.9%) and statistically significant (P=0.001) share of between-population genetic variability were ascertained.
Osiemdziesiąt trzy szczepy Sclerophoma pythiophila były izolowane w okresie 1996 – 2006 z igieł i pędów Pinus sylvestris wykazujących różne typy objawów chorobowych lub uszkodzeń spowodowanych przez Contarinia baeri lub Thecodiplosis brachyntera. Na podstawie 56 uzyskanych markerów RAMS stwierdzono bardzo wysokie zróżnicowanie genetyczne badanych szczepów (średnia wartość wsp. Jaccarda 0.58). Największe podobieństwo genetyczne wykazywały szczepy związane z uszkodzeniem igieł przez Contarinia baeri (0.65), natomiast najmniejsze pochodzące z zamarłych szczytów pędów (0.53). Nie stwierdzono monomorficznych dla poszczególnych grup szczepów markerów, jednak na podstawie macierzy odległości genetycznej Nei wyróżniono grupę blisko spokrewnionych populacji grzyba związanych z uszkodzeniem igieł przez C. baeri lub T. brachyntera (wsp. Nei od 0.035 do 0.059) oraz populacji związanych z występowaniem nekroz na pędach lub zamieraniem ich szczytów (wsp. Nei 0.066). Analiza PCA potwierdziła podobieństwo genetyczne szczepów związanych z uszkodzeniem igieł przez owady oraz szczepów izolowanych z lokalnych nekroz na pędach i zamarłych szczytów pędów. Wysoki stopień zróżnicowania genetycznego między populacjami wykazała analiza AMOVA. Stwierdzono duży (14.9%), wysoce statystycznie istotny (P=0.001) udział miedzypopulacyjnej zmienności genetycznej.
Źródło:
Acta Agrobotanica; 2009, 62, 1
0065-0951
2300-357X
Pojawia się w:
Acta Agrobotanica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
ISSR analysis points to relict character of Aconitum bucovinense Zapal. (Ranunculaceae) at the range margin
Autorzy:
Boron, P.
Zalewska-Galosz, J.
Sutkowska, A.
Zemanek, B.
Mitka, J.
Powiązania:
https://bibliotekanauki.pl/articles/59093.pdf
Data publikacji:
2011
Wydawca:
Polskie Towarzystwo Botaniczne
Tematy:
Carpathians Mountains
conservation genetics
endemic species
marginal population
schizo-endemism
relict population
Aconitum bucovinense
Ranunculaceae
Polish Red Data Book of Plants
genetic diversity
genetic structure
ISSR technique
Opis:
Aconitum bucovinense, a high-mountain species endemic to the Eastern and Southern Carpathians, including the Apuseni Mountains, is legally protected and classified in the Polish Red Data Book of Plants. It attains its NW geographical range in two peripheral populations in the Western Bieszczady Mountains (Polish Eastern Carpathians), isolated by a distance of 13.1 km. PCR-ISSR analysis has been used to elucidate the within- and among-populational levels of species genetic diversity. A UPGMA and block clustering showed discreteness of the populations and subpopulations based on ISSR banding pattern. Analysis of Molecular Variance (AMOVA) revealed significant divergence (P = 0.024) of the two marginal populations and highly significant (P < 0.001) differentiation of subpopulations within populations. The theta index calculated for the two marginal populations and the core population in the Carpathians was 0.131 ±0.030 S.D. Most of the population-genetic diversity indices of the marginal populations were not different from those in the core area but the Shannon’s and rarity indices were lower in the marginal populations. It seems that founder effect and subsequent genetic bottleneck resulted in a fine-scale population genetic structure. The marginal populations under study need a relevant recovery program to maintain their genetic diversity.
Źródło:
Acta Societatis Botanicorum Poloniae; 2011, 80, 4
0001-6977
2083-9480
Pojawia się w:
Acta Societatis Botanicorum Poloniae
Dostawca treści:
Biblioteka Nauki
Artykuł
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