- Tytuł:
- G-PAS 2.0 - an improved version of protein alignment tool with an efficient backtracking routine on multiple GPUs
- Autorzy:
-
Frohmberg, W.
Kierzynka, M.
Blazewicz, J.
Wojciechowski, P. - Powiązania:
- https://bibliotekanauki.pl/articles/201593.pdf
- Data publikacji:
- 2012
- Wydawca:
- Polska Akademia Nauk. Czytelnia Czasopism PAN
- Tematy:
-
pairwise alignment
GPU computing
alignment with backtracking procedure - Opis:
- Several highly efficient alignment tools have been released over the past few years, including those taking advantage of GPUs (Graphics Processing Units). G-PAS (GPU-based Pairwise Alignment Software) was one of them, however, with a couple of interesting features that made it unique. Nevertheless, in order to adapt it to a new computational architecture some changes had to be introduced. In this paper we present G-PAS 2.0 - a new version of the software for performing high-throughput alignment. Results show, that the new version is faster nearly by a fourth on the same hardware, reaching over 20 GCUPS (Giga Cell Updates Per Second).
- Źródło:
-
Bulletin of the Polish Academy of Sciences. Technical Sciences; 2012, 60, 3; 491-494
0239-7528 - Pojawia się w:
- Bulletin of the Polish Academy of Sciences. Technical Sciences
- Dostawca treści:
- Biblioteka Nauki
Artykuł