Temat: DNA sequence - Katalog OPAC zbiorów

Skocz do pozycji: 1.

Tytuł:: Transcriptome sequencing: next generation approach to RNA functional analysis
Autorzy:: Zmienko, A.
Jackowiak, P.
Figlerowicz, M.
Powiązania:: https://bibliotekanauki.pl/articles/81137.pdf
Data publikacji:: 2011
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: RNA molecule
functional analysis
RNA sequence
transcriptome
isoform
DNA microarray
qualitative change
quantitative change
gene expression
hybridization
oligonucleotide probe
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2011, 92, 4
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 2.

Tytuł:: Annotating a non-model plant genome – a study on the narrow-leafed lupin
Autorzy:: Zielezinski, A.
Potarzycki, P.
Ksiazkiewicz, M.
Karlowski, W.M.
Powiązania:: https://bibliotekanauki.pl/articles/80218.pdf
Data publikacji:: 2012
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: genome
plant genome
pipeline
software
narrow-leaved lupin
gene annotation system
gene sequence
DNA sequence
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2012, 93, 3
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 3.

Tytuł:: Search for mouse gene related to GA733 human tumor antigen gene
Autorzy:: Zielewicz, J
Skrzypczak, M.
Wojcierowski, J.
Powiązania:: https://bibliotekanauki.pl/articles/2048195.pdf
Data publikacji:: 1995
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: human antigen
glycoprotein
human genetics
mice
gene sequence
adenocarcinoma
cancer therapy
electrophoresis
carcinoma cell
bacteriophage
antigen
gene
mouse
oncoantigen
hybridization
tumour etiology
tumour
DNA
Opis:: Human antigen GA733-1, defined as 40 kDa cell glycoprotein, is one of the antigens associated with gastrointestinal carcinomas. Its studies may contribute to the tumor etiology and therapy effects in animal model.
Źródło:: Journal of Applied Genetics; 1995, 36, 3; 273-277
1234-1983
Pojawia się w:: Journal of Applied Genetics
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 4.

Tytuł:: Powdery mildew resistance genes in wheat: verification of STS markers
Autorzy:: Stepien, L
Chen, Y.
Chelkowski, J.
Kowalczyk, K.
Powiązania:: https://bibliotekanauki.pl/articles/2048311.pdf
Data publikacji:: 2001
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: Aegilops speltoides
randomly amplified polymorphic DNA analysis
powdery mildew
wheat
wheat cultivar
Sequence Tagged Site marker
resistance gene
Pm gene
Źródło:: Journal of Applied Genetics; 2001, 42, 4; 413-423
1234-1983
Pojawia się w:: Journal of Applied Genetics
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 5.

Tytuł:: Molecular identification of Trichoderma strains collected to develop plant growth-promoting and biocontrol agents
Autorzy:: Oskiera, M.
Szczech, M.
Bartoszewski, G.
Powiązania:: https://bibliotekanauki.pl/articles/1976.pdf
Data publikacji:: 2015
Wydawca:: Instytut Ogrodnictwa
Tematy:: Trichoderma
strain
molecular identification
biological control agent
multilocus sequence typing
phylogenesis
species identification
DNA isolation
Źródło:: Journal of Horticultural Research; 2015, 23, 1
2300-5009
Pojawia się w:: Journal of Horticultural Research
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 6.

Tytuł:: A novel approach for identifying DNA repair pathways proteins using an evolutionary approach: Plasmodium falciparum case study
Autorzy:: Milanowska, K.
Wojtczak, J.
Powiązania:: https://bibliotekanauki.pl/articles/80413.pdf
Data publikacji:: 2016
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: DNA repair
pathway
ortholog
pipeline
Plasmodium falciparum
proteomics
protein
profile analysis
Hidden Markov model
multiple sequence alignment
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2016, 97, 4
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 7.

Tytuł:: First report on the association of a begomovirus with Chrysanthemum indicum exhibiting yellowing of leaf vein disease characterized by molecular studies
Autorzy:: Marwal, A.
Sahu, A.K.
Gaur, R.K.
Powiązania:: https://bibliotekanauki.pl/articles/2047.pdf
Data publikacji:: 2013
Wydawca:: Instytut Ogrodnictwa
Tematy:: Chrysanthemum indicum
ornamental plant
leaf disease
DNA probe
cotton leaf curl virus
sequence analysis
clerodendron yellow mosaic virus
southern blotting
Źródło:: Journal of Horticultural Research; 2013, 21, 2
2300-5009
Pojawia się w:: Journal of Horticultural Research
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 8.

Tytuł:: DNA polymorphism in locus D1S80 in Poland. DNA profiling and detection of new alleles by heteroduplex formation between alleles of the same size
Autorzy:: Kwiatkowska, J
Dziechciowska, K
Lisiecka, D
Slomski, R
Powiązania:: https://bibliotekanauki.pl/articles/2046677.pdf
Data publikacji:: 1997
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: DNA sequence
polymorphism
Polska
hybridization
Polish population
heteroduplex formation
DNA polymorphism
same size
polymerase chain reaction
allele
distribution
Opis:: We have analysed allele distribution at the highly polymorphic variable number of tandem repeats (VNTR) locus D1S80 (pMCT118) in the Polish population using the, polymerase chain reaction (PCR) technique. Characteristics of the D1S80 locus makes it a very useful marker for population genetic research, genetic linkage studies and forensic identification of individuals. During our routine application of the D1S80 marker to paternity testing in several cases of homozygosity detected by polyacrylamide gel electrophoresis, heteroduplex formation for alleles 18 and 24 was also observed. Direct sequencing of PCR products revealed that alleles 18 and 24 of locus D1S80 actually represent a mixture composed of different sequences. Our observations indicate that identification of some 18 and 24 VNTR alleles based only on size estimated in electrophoretic analyses could lead to errors in paternity testing and DNA profiling.
Źródło:: Journal of Applied Genetics; 1997, 38, 3; 335-341
1234-1983
Pojawia się w:: Journal of Applied Genetics
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 9.

Tytuł:: Sequence-specific p53 gene damage by chloroacetaldehyde and its repair kinetics in Escherichia coli
Autorzy:: Kowalczyk, Paweł
Cieśla, Jarosław
Saparbaev, Murat
Laval, Jacques
Tudek, Barbara
Powiązania:: https://bibliotekanauki.pl/articles/1041247.pdf
Data publikacji:: 2006
Wydawca:: Polskie Towarzystwo Biochemiczne
Tematy:: chloroacetaldehyde
p53
replication
exocyclic DNA adducts
vinyl chloride
LM-PCR
DNA repair
sequence-specific DNA damage
Opis:: Oxidative stress and certain environmental carcinogens, e.g. vinyl chloride and its metabolite chloroacetaldehyde (CAA), introduce promutagenic exocyclic adducts into DNA, among them 1,N6-ethenoadenine (εA), 3,N4-ethenocytosine (εC) and N2,3-ethenoguanine (εG). We studied sequence-specific interaction of the vinyl-chloride metabolite CAA with human p53 gene exons 5-8, using DNA Polymerase Fingerprint Analysis (DPFA), and identified sites of the highest sensitivity. CAA-induced DNA damage was more extensive in p53 regions which revealed secondary structure perturbations, and were localized in regions of mutation hot-spots. These perturbations inhibited DNA synthesis on undamaged template. We also studied the repair kinetics of CAA-induced DNA lesions in E. coli at nucleotide resolution level. A plasmid bearing full length cDNA of human p53 gene was modified in vitro with 360 mM CAA and transformed into E. coli DH5α strain, in which the adaptive response system had been induced by MMS treatment before the cells were made competent. Following transformation, plasmids were re-isolated from transformed cultures 35, 40, 50 min and 1-24 h after transformation, and further subjected to LM-PCR, using ANPG, MUG and Fpg glycosylases to identify the sites of DNA damage. In adaptive response-induced E. coli cells the majority of DNA lesions recognized by ANPG glycosylase were removed from plasmid DNA within 35 min, while MUG glycosylase excised base modifications only within 50 min, both in a sequence-dependent manner. In non-adapted cells resolution of plasmid topological forms was perturbed, suggesting inhibition of one or more bacterial topoisomerases by unrepaired ε-adducts. We also observed delayed consequences of DNA modification with CAA, manifesting as secondary DNA breaks, which appeared 3 h after transformation of damaged DNA into E. coli, and were repaired after 24 h.
Źródło:: Acta Biochimica Polonica; 2006, 53, 2; 337-347
0001-527X
Pojawia się w:: Acta Biochimica Polonica
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 10.

Tytuł:: Evaluation of methods for Erwinia amylovora detection
Autorzy:: Kaluzna, M.
Pulawska, J.
Mikicinski, A.
Powiązania:: https://bibliotekanauki.pl/articles/1986.pdf
Data publikacji:: 2013
Wydawca:: Instytut Ogrodnictwa
Tematy:: Erwinia amylovora
fire blight
real-time polymerase chain reaction
LAMP technique
DNA sequence
detection method
disease control
Źródło:: Journal of Horticultural Research; 2013, 21, 2
2300-5009
Pojawia się w:: Journal of Horticultural Research
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 11.

Tytuł:: Position weight matrix model as a tool for the study of regulatory elements distribution across the DNA sequence
Autorzy:: Jaksik, R.
Rzeszowska-Wolny, J.
Powiązania:: https://bibliotekanauki.pl/articles/229738.pdf
Data publikacji:: 2010
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: transcription factors
TFBS
regulation of gene expression
regulatory sequence elements
DNA
position weight matrix
PWM
Opis:: Ab initio methods of DNA regulatory sequence region prediction known as transcription factor binding sites (TFBS) are a very big challenge to modern bioinformatics. Although the currently available methods are not perfect they are fairly reliable and can be used to search for new potential protein-DNA interaction sites. The biggest problem of ab initio approaches is the very high false positive rate of predicted sites which results mainly from the fact that TFBS are very short and highly degenerate. Because of that they can occur by chance every few hundred bases making the task of computational prediction extremely difficult if one aims to reduce the high false positive rate keeping highest possible sensitivity to predict biologically meaningful sequence regions. In this work we present a new application that can be used to predict TFBS regions in very large datasets based on position weight matrix models (PWM’s) using one of the most popular prediction methods. The presented application was used to predict the concentration of TFBS in a set of nearly 2.2 thousand unique sequences of human gene promoter regions. The study revealed that the concentration of TFBS further than 1kbp from the transcription initiation site is constant but it decreases rapidly while getting closer to the transcription initiation site. The decreasing TFBS concentration in the vicinity of genes might result from evolutionary selection which keeps only sites responsible for interactions with proteins being part of a specific regulatory mechanism leading to cells survival.
Źródło:: Archives of Control Sciences; 2010, 20, 4; 491-501
1230-2384
Pojawia się w:: Archives of Control Sciences
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 12.

Tytuł:: Brachypodium distachyon – a model plant to study grass genome structure, dynamics and evolution
Autorzy:: Idziak, D.
Hasterok, R.
Betekhtin, A.
Borowska-Zuchowska, N.
Braszewska-Zalewska, A.
Chwialkowska, K.
Gorkiewicz, R.
Kus, A.
Kwasniewska, J.
Kwasniewski, M.
Robaszkiewicz, E.
Siwinska, D.
Wolny, E.
Chrominski, K.
Tkacz, M.
Powiązania:: https://bibliotekanauki.pl/articles/951271.pdf
Data publikacji:: 2015
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: Brachypodium distachyon
model plant
grass
genome structure
Expressed Sequence Tag programme
fluorescent in situ hybridization
chromosome painting
DNA methylation
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2015, 96, 1
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 13.

Tytuł:: Ancient history of X-ray crystal structure of B-DNA oligomers and its perspective
Autorzy:: Grzeskowiak, K.
Ohishi, H.
Powiązania:: https://bibliotekanauki.pl/articles/80367.pdf
Data publikacji:: 2011
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: ancient history
X-ray crystallography
crystal structure
DNA oligomer
DNA binding protein
DNA binding drug
nanotechnology
methylation
nanotube
antitumour agent
DNA restriction
DNA sequence
protein
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2011, 92, 3
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 14.

Tytuł:: The role of WRKY transcription factors in plants
Autorzy:: Grzechowiak, M.
Powiązania:: https://bibliotekanauki.pl/articles/80955.pdf
Data publikacji:: 2014
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: WRKY transcription factor
transcription regulation
plant
sweet potato
Ipomoea batatas
biotic stress
abiotic stress
phytohormone
DNA binding
amino acid sequence
Źródło:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2014, 95, 3
0860-7796
Pojawia się w:: BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 15.

Tytuł:: G-DNA – a highly efficient multi-GPU/MPI tool for aligning nucleotide reads
Autorzy:: Frohmberg, W.
Kierzynka, M.
Blazewicz, J.
Gawron, P.
Wojciechowski, P.
Powiązania:: https://bibliotekanauki.pl/articles/200827.pdf
Data publikacji:: 2013
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: DNA assembly preprocessing
sequence alignment
GPU computing
Opis:: DNA/RNA sequencing has recently become a primary way researchers generate biological data for further analysis. Assembling algorithms are an integral part of this process. However, some of them require pairwise alignment to be applied to a great deal of reads. Although several efficient alignment tools have been released over the past few years, including those taking advantage of GPUs (Graphics Processing Units), none of them directly targets high-throughput sequencing data. As a result, a need arose to create software that could handle such data as effectively as possible. G-DNA (GPU-based DNA aligner) is the first highly parallel solution that has been optimized to process nucleotide reads (DNA/RNA) from modern sequencing machines. Results show that the software reaches up to 89 GCUPS (Giga Cell Updates Per Second) on a single GPU and as a result it is the fastest tool in its class. Moreover, it scales up well on multiple GPUs systems, including MPI-based computational clusters, where its performance is counted in TCUPS (Tera CUPS).
Źródło:: Bulletin of the Polish Academy of Sciences. Technical Sciences; 2013, 61, 4; 989-992
0239-7528
Pojawia się w:: Bulletin of the Polish Academy of Sciences. Technical Sciences
Dostawca treści:: Biblioteka Nauki

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