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Tytuł:
Molecular Phylogenetics Evidence for a Novel Lineage of Amoebae Within Discosea (Amoebozoa: Lobosa)
Autorzy:
Corsaro, Daniele
Venditti, Danielle
Powiązania:
https://bibliotekanauki.pl/articles/763405.pdf
Data publikacji:
2013
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Amoebozoa, environmental 18S rDNA, small amoebae, Dermamoebida
Opis:
Some amoebae were recovered from freshwater samples on agar plates. Due to a fungal contamination tightly associated with these amoebae, it was impossible to correctly characterize them on a morphological base, but sequences of the small subunit ribosomal RNA gene (SSU rDNA) were successfully obtained from three strains. Phylogenetic analysis performed on these SSU rDNA allowed to identify these amoebae as members of a new lineage, related to the Dermamoebida, which includes also several other environmental SSU sequences.
Źródło:
Acta Protozoologica; 2013, 52, 4
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Molecular Characterization of Two Myxosporean Species, Henneguya namae Haldar et al. 1983 and Myxobolus sophorae Jayasri, 1982 (Myxosporea: Myxobolidae)
Autorzy:
Garg, Anupma
Chaudhary, Anshu
Gupta, Abhishek
Kumar, Abhinav
Sharma, Bindu
Singh, Hridaya Shanker
Powiązania:
https://bibliotekanauki.pl/articles/52057885.pdf
Data publikacji:
2020
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
fish
Henneguya
India
Myxobolus
phylogeny
18S rDNA
Opis:
In Indian freshwater fish myxosporean infections are among the most cosmopolitan parasites, they are relatively well studied morphologically but their phylogenetic relationships were unclear and the genetic data is limited only to a few species. The study aims to present molecular data for two myxosporean species, Henneguya namae Haldar et al. 1983 and Myxobolus sophorae Jayasri, 1982 collected from Indian freshwater fish, the elongate glass-perchlet Chanda nama (=Ambassis nama) and pool barb Puntius sophore, respectively. In the present study molecular data are provided for H. namae and M. sophorae using nested PCR. The obtained partial 18S rDNA gene sequences were analyzed using maximum likelihood (ML) and Bayesian inference (BI) methods. The 18S rDNA gene sequences of H. namae showed similarity with the sequences of H. chaudhuryi, Henneguya sp. RA-2015, H. voronini and H. setiuensis about 72.1 to 78% and M. sophorae with Myxobolus ticto was about 90% respectively. The aim of this paper was to identify H. namae and M. sophorae morphologically and using molecular methods.
Źródło:
Acta Protozoologica; 2020, 59, 1; 39-53
0065-1583
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Morphology, Ciliary Pattern and Molecular Phylogeny of Trachelophyllum brachypharynx Levander, 1894 (Litostomatea, Haptoria, Spathidiida)
Autorzy:
JANG, Seok Won
VĎAČNÝ, Peter
SHAZIB, Shahed Uddin Ahmed
SHIN, Mann Kyoon
Powiązania:
https://bibliotekanauki.pl/articles/763656.pdf
Data publikacji:
2015
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
18S rRNA gene, dorsal brush, Korea, lepidosomes, Trachelophyllidae
Opis:
We isolated a relatively unknown haptorian ciliate, Trachelophyllum brachypharynx, in brackish water from the mouth of the Taehwa River, South Korea. The morphology of this isolate was studied using in vivo observation and protargol impregnation, and its evolutionary history was revealed by phylogenetic analysis of the 18S rRNA gene. The main features of T. brachypharynx include (i) a very narrowly fusiform and slightly contractile body about 380 × 40 μm in size; (ii) two ellipsoidal macronuclear nodules typically connected by a fine strand; (iii) a single terminal contractile vacuole; (iv) filiform extrusomes that are typically 30 µm long; (v) an average of 24 ciliary rows, with two of them anteriorly differentiated into an isostichad dikinetidal dorsal brush; and (vi) hat-shaped lepidosomes. Based on the 18S rRNA gene phylogeny, T. brachypharynx clustered together with Trachelophyllum sp. within the order Spathidiida. Furthermore, phylogenetic trees and networks indicate some members from the genera Enchelyodon and Spathidium as the nearest relatives of trachelophyllids. Therefore, based on the present molecular and comparative-morphological analyses, we suggested a hypothesis explaining how trachelophyllids may have evolved from a spathidiid-like ancestor via an enchelyodonid-like stage.
Źródło:
Acta Protozoologica; 2015, 54, 2
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Description of Epistylis camprubii n. sp., a Species Highly Tolerant to Ammonium and Nitrite
Autorzy:
Canals, Oriol
Salvadó, Humbert
Powiązania:
https://bibliotekanauki.pl/articles/763511.pdf
Data publikacji:
2016
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Peritrichia, wastewater treatment, ciliates, 18s rRNA, ammonium, nitrite
Opis:
A new peritrich species highly tolerant to ammonium and nitrite, Epistylis camprubii n. sp., was found adhered to the biofilm of two advanced wastewater treatment plants treating high ammonium-loaded wastewater in Rubí, Spain. Its morphology, oral infraciliature and phylogenetic position in the peritrich clade were studied. The new species is a vase-shaped peritrich, constricted below the peristomial lip, with an in vivo average length of 58.7 ± 10.1 µm, average width of 32.0 ± 5.4 µm, and a longitudinally striated, compact stalk that occasionally exhibits uneven thickness and rarely shows transverse segments. The peristomial disc is commonly rounded or pointed, and rarely umbilicated. The C-shaped macronucleus is located in the adoral half of the body, and the only contractile vacuole lies in the adoral third of the zooid. The molecular analysis of the 18s gene sequence clustered E. camprubii n. sp. together with the other Epistylis, with the exception of Epistylis galea.
Źródło:
Acta Protozoologica; 2016, 55, 1
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Morphology and Molecular Analyses of a New Marine Ciliate, Arcuseries minima sp. nov. (Ciliophora: Urostylidae)
Autorzy:
Kim, Kang-San
Chae, Kyu-Seok
Min, Gi-Sik
Powiązania:
https://bibliotekanauki.pl/articles/52090014.pdf
Data publikacji:
2019
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Marine ciliate
Arcuseries
phylogenetic analysis
urostylid
18S rDNA sequence
Opis:
A new marine urostylid ciliate, Arcuseries minima sp. nov., was discovered in South Korea. Morphological observations and molecular phylogenetic analyses based on small subunit ribosomal DNA (18S rDNA) sequences were used to describe the new species. Arcuseries minima is most similar to A. scutellum among all   Arcuseries species, but differs in the following main characters: number of adoral membranelles (13–16 vs. 17 or 18), cortical granules (yellowish, clustered around cirri and dorsal bristles vs. colorless, irregularly scattered), number of macronuclear nodules (20–27 vs. 42–90), number of midventral cirri (5–10 vs. 12–14), and number  f transverse cirri (5 or 6 vs. 8). The new species and A. scutellum differ from A. petzi and A. warreni in having smaller body size (≤80 μm vs. ≥80 μm) and fewer cirri: left marginal (≤ 17 vs. ≥ 18) and transverse (≤ 8 vs. ≥8) cirri. This relationship was supported by the phylogenetic tree, where these two groups were separated into two branches.
Źródło:
Acta Protozoologica; 2019, 58, 2; 43-51
0065-1583
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Reconstruction of Evolutionary History of Pleurostomatid Ciliates (Ciliophora, Litostomatea, Haptoria): Interplay of Morphology and Molecules
Autorzy:
VĎAČNÝ, Peter
SHIN, Mann Kyoon
KIM, Ji Hye
JANG, Seok Won
SHAZIB, Shahed Uddin Ahmed
RAJTER, Ľubomír
Powiązania:
https://bibliotekanauki.pl/articles/763636.pdf
Data publikacji:
2015
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
18S rRNA gene, Acineria, Epiphyllidae fam. nov., Kentrophyllum, Korea
Opis:
Pleurostomatids are raptorial ciliates that form a very distinct group within the Haptoria. Traditionally, the order Pleurostomatida was divided into two families: the Amphileptidae with two perioral kineties and a suture formed by the right side ciliary rows, and the Litonotidae with three perioral kineties and without suture. However, molecular phylogenies depicted the “traditional” Amphileptidae as a paraphyletic assemblage nesting also the Litonotidae. To overcome this problem we have analyzed genealogy of pleurostomatids using morphological data and 18S rRNA gene sequences, including newly sequenced genera Acineria and Kentrophyllum. Specifically, we have combined a morphological and molecular approach and have used also some other phylogenetic tools such as phylogenetic networks, split spectrum analysis, quartet mapping as well as the likelihood method of tracing history of morphological characters. These analyses show that: (1) there are not two but three distinct pleurostomatid lineages – Epiphyllidae fam. nov., Amphileptidae and Litonotidae; (2) epiphyllids (Epiphyllum + Kentrophyllum) represent a basal pleurostomatid group which is defined by two perioral kineties, by the presence of a suture on both the right and the left side of the body, by the loss of the oral bulge extrusomes, and by the extrusome fringe extending all around the body except for the oral region; (3) the families Amphileptidae and Litonotidae are monophyletic each, and represent sister groups; (4) Acineria belongs to the Litonotidae, as already indicated by morphological data; (5) Loxophyllum is a monophyletic and crown genus of the Litonotidae; and (6) Litonotus is paraphyletic, which could be very likely caused by a rapid radiation event that did not allow primary nucleotide homologies to be fixed.
Źródło:
Acta Protozoologica; 2015, 54, 1
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Two new Myxobolus spp. (Myxozoa: Myxobolidae) from white bream, Blicca bjoerkna (Linnaeus, 1758) developing in basifilamental location of gills
Autorzy:
Molnár, Kálmán
Eszterbauer, Edit
Guti, Csaba F.
Székely, Csaba
Powiązania:
https://bibliotekanauki.pl/articles/763533.pdf
Data publikacji:
2014
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Myxozoa, site selection, tissue tropism, occurrence, histology, 18S rDNA, phylogeny
Opis:
Two new Myxobolus species, M. bjoerknae sp. n. and M. lamellobasis sp. n. have been described from the gills of white bream, Blicca bjoerkna. Plasmodia of M. bjoerknae sp. n. developed in the connective tissue inside the cartilaginous gill arch, while plasmodia of M. lamellobasis sp. n. seem to start their development in the multilayered epithelium between two lamellae close to the base of gill filaments. Then they may bulge out of the interlamellar space fused to a large bulk locating at the base of filaments. The large, ellipsoidal spores of M. bjoerknae sp. n. 17.4 × 13.1 µm in size, resembled the spores of other species developing in the gill arch (e.g. M. fundamentalis, M. gayerae, and M. pfeifferi), but differed from them in its 18S rDNA sequence. Roundish spores of M. lamellobasis sp. n. with a size of 11.1 × 8.6 µm resembled the spores of M. impressus developing interlamellarly and the spores of M. rotundus, M. parviformis, and M. muellericus having intralamellar localization. However, the detected genetic difference clearly distinguished it from the other species developing in similar tissue location. The phylogenetic location of the two newly described species seems to correlate both with spore shape and fish host species.
Źródło:
Acta Protozoologica; 2014, 53, 3
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Morpho-molecular Characterization of the Litostomatean Predatory Ciliate Phialina pupula (Müller, 1773) Foissner, 1983 (Haptoria, Lacrymariidae)
Autorzy:
Rajter, Ľubomír
Bourland, William
Vďačný, Peter
Powiązania:
https://bibliotekanauki.pl/articles/52076120.pdf
Data publikacji:
2019
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
18S rRNA gene
Boise
floodplain sand
ITS region
Lacrymariidae
phylogeny
Opis:
The morphology and phylogenetic position of a haptorian ciliate, Phialina pupula (Müller, 1773) Foissner, 1983, isolated from microaerobic sandy sediments of the floodplain area of the Boise River, Idaho, U.S.A., were studied using live observation, protargol impregnation, scanning electron microscopy, and the 18S rRNA gene as well as the ITS region. The Boise population of P. pupula is characterized by a size of about 60–130 × 20–50 μm, an elliptical macronucleus with a single micronucleus, highly refractive dumbbell-shaped inclusions scattered throughout the cytoplasm and concentrated in the anterior body half, a single subterminal/terminal contractile vacuole, about 10 μm long rod-shaped extrusomes, and an average of 15 ciliary rows. In phylogenetic analyses, the newly obtained sequences from P. pupula and Lacrymaria olor clustered within the family Lacrymariidae with full to moderate statistical support. Neither the genus Phialina nor the genus Lacrymaria was depicted monophyletic both in the single gene and multigene phylogenetic inferences. Specifically, the genus Phialina was shown as a paraphyletic assemblage containing members of the polyphyletic genus Lacrymaria. This indicates that the phialinid bauplan, i.e., an anterior body end differentiated into a head-like structure directly attached to the trunk, might represent the ground pattern in the family Lacrymariidae. On the other hand, the long highly contractile neck carrying the head-like structure probably evolved later and convergently in multiple Lacrymaria species from Phialina-like ancestors.
Źródło:
Acta Protozoologica; 2019, 58, 2; 53-68
0065-1583
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Occurrence of Ditylenchus destructor Thorne, 1945 on a sand dune of the Baltic Sea
Autorzy:
Dobosz, R.
Rybaczyk-Mydlowska, K.
Winiszewska, G.
Powiązania:
https://bibliotekanauki.pl/articles/2084759.pdf
Data publikacji:
2020
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Ammophila arenaria
internal transcribed spacer (ITS)
potato rot nematode
18S
28S rDNA
Opis:
Ditylenchus destructor is a serious pest of numerous economically important plants worldwide. The population of this nematode species was isolated from the root zone of Ammophila arenaria on a Baltic Sea sand dune. This population’s morphological and morphometrical characteristics corresponded to D. destructor data provided so far, except for the stylet knobs’ height (2.1–2.9 vs 1.3–1.8) and their arrangement (laterally vs slightly posteriorly sloping), the length of a hyaline part on the tail end (0.8–1.8 vs 1–2.9), the pharyngeal gland arrangement in relation to the intestine (dorsal or ventral vs dorsal, ventral or lateral) and the appearance of vulval lips (smooth vs annulated). Ribosomal DNA sequence analysis confirmed the identity of D. destructor from a coastal dune.
Źródło:
Journal of Plant Protection Research; 2020, 60, 1; 31-40
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
A Hotspot of Amoebae Diversity: 8 New Naked Amoebae Associated with the Planktonic Bloom-forming Cyanobacterium Microcystis
Autorzy:
van Wichelen, Jeroen
Bass, David
Berney, Cédric
Claeys, Myriam
d’Hondt, Sofie
Vanormelingen, Pieter
Vyverman, Wim
Powiązania:
https://bibliotekanauki.pl/articles/763601.pdf
Data publikacji:
2016
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Naked amoebae, Microcystis, morphology, 18S rDNA, harmful algal blooms, grazing, Europe
Opis:
The colonies of Microcystis, one of the most common bloom-forming cyanobacteria worldwide, harbor a diverse community of microorganisms. Among these, naked amoebae feeding on Microcystis cells can strongly influence natural Microcystis population dynamics. In this study, we investigated the species diversity of these amoebae based on 26 Microcystis-associated amoebae (MAA) strains from eutrophied water bodies in Belgium and elsewhere in western Europe. A detailed morphological characterization in combination with 18S rDNA (SSU) phylogenies revealed the presence of no less than 10 species. Nine of these belonged to the known genera Vannella (2 species), Korotnevella (2), Copromyxa (2), Vexillifera (1), Cochliopodium (1) and the recently described Angulamoeba (1). Only two were previously described, the others were new to science. One taxon could not be assigned to a known genus and is here described as Schoutedamoeba gen. n., representing a new variosean lineage. The discovery of so many new species from only one very specific habitat (Microcystis colonies) from a rather restricted geographical area indicates that the diversity of planktonic naked amoebae is much higher than previously appreciated and that only a tiny fraction of the total diversity of naked amoebae is currently known.
Źródło:
Acta Protozoologica; 2016, 55, 2
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
A New Trichodina Species (Peritrichia: Mobilida) from Anuran Tadpole Hosts, Sclerophrys spp. in the Okavango Panhandle, Botswana, with Comments on this Taxon
Autorzy:
de Jager, Gerhard P.
Basson, Linda
van Marwijk, Jacqueline
Powiązania:
https://bibliotekanauki.pl/articles/52089989.pdf
Data publikacji:
2019
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Trichodina koloti sp. nov.
Sclerophrys spp.
morphology
18S ribosomal DNA
southern Africa
Opis:
Mobiline taxonomic data is mostly inferred from populations collected in and on hosts associated with aquaculture. Even though these conditions may be conducive for studies relating to the hosts, accurate taxonomic inferences of the symbionts will be problematic. The site for the present study was the Okavango Panhandle region in Northern Botswana, an isolated, natural area with minimal anthropogenic influences. Morphometric and molecular evidence revealed that anuran tadpole trichodinids, up to now reported as Trichodina heterodentata Duncan 1977 and T. hypsilepis Wellborn 1967 from multiple host types, are in fact a new, more host specific species. This study includes comprehensive denticle descriptions of both the anuran hosted trichodinid and the morphologically similar T. hypsilepis restricted to teleost hosts (previously T. heterodentata).
Źródło:
Acta Protozoologica; 2019, 58, 3; 141-153
0065-1583
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
EF1α is a suitable housekeeping gene for RT-qPCR analysis during osteogenic differentiation of mouse bone marrow-derived mesenchymal stem cells
Autorzy:
Chen, Xingyun
Zhang, Bo
Zhao, Yan
Liu, Ping
Zhou, Yuanguo
Powiązania:
https://bibliotekanauki.pl/articles/1039535.pdf
Data publikacji:
2013
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
EF1α; RGS4; 18S rRNA; RT-qPCR; RPL 13a; CCG-1986
Opis:
The expression of predominant housekeeping genes used in RT-qPCR can vary during development and differentiation. The frequently used housekeeping genes (ACTB, GAPDH, 18S rRNA, EF1α and RPL 13a) were evaluated during an early stage of the osteogenic differentiation of mouse bone marrow-derived mesenchymal stem cells (mMSCs) (under normal conditions or treated with CCG-4986) to identify housekeeping genes whose expression remained constant during osteogenic differentiation. When we used RGS4 mRNA, which was determined as copy number per μg of total RNA, to normalize gene expression, we observed that the relative EF1α expression profile was consistent with RGS4 expression after treatment with CCG-4986. All the relative expression profiles of the EF1α, 18S rRNA, and RPL13a housekeeping genes were consistent with RGS4 profiles determined by measuring mRNA copies under normal osteogenic differentiation conditions. The expression profiles calibrated by ACTB and GAPDH were not consistent with those determined using mRNA copy number in untreated cells or cells treated with CCG-4986 under osteogenic differentiation conditions. Under normal osteogenic differentiation conditions, EF1α, 18S rRNA, and RPL 13a are suitable housekeeping genes for RT-qPCR analysis. However, EF1α is the only suitable gene upon CCG-4986 treatment.
Źródło:
Acta Biochimica Polonica; 2013, 60, 3; 381-386
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Wpływ metodyki badań na ocenę struktury zbiorowisk mikroorganizmów w glebie leśnej
Effect of the methodology of studies on the structure of the microorganisms communities in the forest soil
Autorzy:
Behnke-Borowczyk, J.
Kwaśna, H.
Powiązania:
https://bibliotekanauki.pl/articles/989286.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
gleby lesne
mikroorganizmy glebowe
grzyby mikroskopowe
struktura zbiorowisk
metodyka badan
metody klasyczne
metody molekularne
startery NS1
startery NS2
DNA
region 18S
classical method of isolation
fungi
microorganisms
ns1
ns2
18s rdna
soil
Opis:
Two different communities of microorganisms were identified in soils by application of the classical method of fungi isolation (soil dilution, culturing on artificial media, morphotyping) and a molecular method (extraction of the environmental DNA, amplification with universal primers NS1 and NS2, cloning and sequencing of representative clones). No organisms were common to both communities. Apart from rare representatives of the Animalia, communities included single fungus−like Eucarya belonging to the Protista, Class Oomycota, and numerous fungi belonging to Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota orders. In total, 88 species were identified in four soil samples. Fungi were mostly Ascomycota. The classical method was particularly effective in detection of fungi important for creation of phytosanitary conditions of soil, i.e. antagonists (Penicillium, Tolypocladium and Trichoderma) and potential stimulants (dark−pigmented Hormiactis candida, Humicola spp. and Phialophora spp.) of phytopathogens (including the common forest genera Armillaria and Heterobasidion). Application of the classical method allowed the detection of mycorrhizal Ascomycota from the genus Oidiodendron. Application of the molecular method allowed the detection of 13 mycorrhizal Basidiomycota. Although primers NS1 and NS2 were designed from a match with DNA of culturable organisms, they also amplified the DNA of non−culturable organisms. This emphasizes their potential usefulness in studies of the biodiversity of microorganisms in environmental samples. The shortage of reference sequences in the database discourages use of the 18S rDNA region in studies on fungal communities. The studies on the biodiversity of microorganisms need the application of a few independent methods of detection and identification.
Źródło:
Sylwan; 2016, 160, 06; 492-503
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Zastosowanie regionu ITS1/2 rDNA i 18S rDNA do badania mykobioty gleby leśnej
Use of ITS1/2 rDNA and 18S rDNA in studies of the forest soil mycobiota
Autorzy:
Behnke-Borowczyk, J.
Kwaśna, H.
Powiązania:
https://bibliotekanauki.pl/articles/989532.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
gleby lesne
mikroorganizmy glebowe
grzyby glebowe
struktura zbiorowisk
metody badan
metody molekularne
DNA rybosomalny
region ITS1/2
region 18S
detection
forest
its1/2 rdna
ns1
ns2
18s rdna
microorganisms
mycobiota
soil
Opis:
The aim of the studies was to check the usefulness of ITS1/2 rDNA and 18S rDNA regions in the molecular investigation of forest soil microbiota structure. Soil studied, originated from a 1−year−old plantation and a 40−year old stand of Scots pine located in Bierzwnik and Międzychów forest districts located 200 km apart. The hypothesis assumed that both approaches lead to the discovery of abundant microbiota communities with different structures and with rare common species. The environmental DNA was extracted with a Power Soil ® DNA Isolation Kit from two soil samples in each site. The ITS1/2 rDNA was amplified with specific primers ITS1 and ewfitsrev 1, and 18S rDNA with universal primers NS1 and NS2. PCR products were cloned into pGEM−T Easy. Inserts were primarily selected in blue/white screening on a X−gal medium. Representative clones were further selected in two separate RFLP analyses with HhaI and BsuRI restriction enzymes. Representative clones purified and sequenced using the Sanger Method in the DNA Research Centre (Poznań). Each sequence was identified to the lowest taxonomic rank. Ninety to 233 clones with DNA of 5−44 taxa including 3−37 taxa of fungi were obtained from 4 samples of soil. After application of ITS1/2 rDNA and 18S rDNA, the fungal DNA was detected respectively in 89,60−100,00% and 11,77−64,8% clones and the number of fungal species detected was respectively 12−37 and 3−19. Fungi were represented by four orders: Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota. Both primers also amplified also DNA of other organisms (mostly from Animalia and Protista Kingdom) represented by 0−9 taxa. If compared, the application of forest soil microbiota structure with ITS1/2 rDNA and 18S rDNA led to detect a lower abundance of fungi and a bigger abundance of other organisms. Considering the higher number of clones and taxa recognized, the region of ITS1/2 rDNA was more effective in the studies of the soil microbiota structure. The region of 18S rDNA was efficient in local detection of Chytridiomycota and Zygomycota and of rare species of fungi from Ascomycota and Basidiomycota. Despite the deficiency of NCBI database the use of the 18S rDNA region in studies on fungal community the region should be included in molecular studies of fungal diversity. It is concluded that studies on the biodiversity of soil microorganisms need the application of a few independent methods of detection and identification.
Źródło:
Sylwan; 2016, 160, 07; 564-572
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Wyświetlanie 1-15 z 46

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