Temat: 16s rrna - Katalog OPAC zbiorów

Skocz do pozycji: 1.

Tytuł:: Identification and phenotypic plasticity of Pseudanabaena catenata from the Svalbard archipelago
Autorzy:: Khan, Zoya
Smykla, Jerzy
Wan Omar, Wan Maznah
Merican Mohd Sidik Merican, Faradina
Asmawarnie Azizan, Asmimie
Pin Foong, Choon
Convey, Peter
Najimudin, Nazalan
Aisyah Alias, Siti
Powiązania:: https://bibliotekanauki.pl/articles/2042152.pdf
Data publikacji:: 2017
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: 16S rRNA
Arctic
Cyanobacteria
Polyphasic approach
Pseudanabaena
Źródło:: Polish Polar Research; 2017, 38, 4; 445-458
0138-0338
2081-8262
Pojawia się w:: Polish Polar Research
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 2.

Tytuł:: Some corrosive bacteria isolated from the technogenic soil ecosystem in Chernihiv city (Ukraine)
Autorzy:: Tkachuk, Nataliia
Zelena, Liubov
Powiązania:: https://bibliotekanauki.pl/articles/2026000.pdf
Data publikacji:: 2021
Wydawca:: Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:: 16S rRNA gene
microbial induced corrosion
phenotypic characteristics
Opis:: The soil microbiome is exposed to technogenic influence during the operation of metal structures. There are quantitative and qualitative changes in the microbiota of the technogenic ecosystem. During the study of the technogenic soil ecosystem (ferrosphere), samples of which were taken in the field (Chernihiv, Ukraine: 51°29’58”N, 31°16’09”E), the presence of corrosively active microbial cenosis was established: sulfate-reducing, denitrifying, iron-reducing (using acetate as the only electron donor, and Fe (III) as the only electron acceptor) and ammonifying bacteria. The predominant representatives of corrosively active groups of bacteria were isolated. They were identified as Bacillus simplex, Streptomyces gardneri, Streptomyces canus (ammonifying bacteria), Fictibacillus sp. (ammonifying bacteria with iron-reducing ability), Anaerotignum (Clostridium) propionicum (organic acid-producing bacteria), Desulfovibrio oryzae (sulfate-reducing bacteria) based on some microbiological, physiological and biochemical, genetic features. Strains of heterotrophic and hemolitotrophic bacteria (individual representatives and their associations) isolated from the technogenic ecosystem can be used in both industrial and technological spheres. The interaction of isolated bacteria in the process of microbial induced corrosion is a prospect for further research.
Źródło:: Studia Quaternaria; 2021, 38, 2; 101-108
1641-5558
2300-0384
Pojawia się w:: Studia Quaternaria
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 3.

Tytuł:: Molecular diversity of the bacterial community associated with Acropora digitifera (Dana, 1846) corals on Rancabuaya coastline, Garut District, Indonesia
Autorzy:: Rizal, Achmad
Akbarsyah, Nora
Kdyp, Pringgo
Permana, Rega
Andhikawati, Aulia
Powiązania:: https://bibliotekanauki.pl/articles/1030642.pdf
Data publikacji:: 2020
Wydawca:: Przedsiębiorstwo Wydawnictw Naukowych Darwin / Scientific Publishing House DARWIN
Tematy:: Acropora digitifera
Bacteria
Culture
Gen 16S rRNA
Metagenome
Opis:: Bacteria are one of the prokaryotic microorganisms that are symbiotic with coral reefs. The purpose of this study was to determine the diversity of bacterial communities associated with Acropora digitifera corals in the rancabuaya coastline of Garut district, West Java through a metagenomic and cultural approach. Stages of research include tissue isolation using waterpics, isolation of bacterial genomic DNA, sequencing using the NGS (Next Generation Sequencing) method of Hiseq using 16S rRNA V3-V4 region 341F and 806R primers for the metagenomic approach. While the culture approach, carried out inoculation, bacterial cultivation, gram staining, then proceed with the identification of molecular characteristics of DNA with 16S rRNA gene sequences. Dominantly, the results of bacterial identification were obtained as many as 77 species from 10 genera 10 families 10 orders of 10 classes and 4 phylum and unidentified reads of 6%. The results of the identification of 16S rRNA showed that the isolate ACD.P4.PH7.P had a close relationship with the Bacillus flexus strain BF strain zb strain with a similarity of 85.44%. Isolate ACD.P4.PH9.P has a close relationship with Bacillus sp. c234 with a 98.50% similarity. Isolate ACD.P4.PH9.K has an approach with the species Bacillus sp. strain 6RM1 with a similarity of 94.78%.
Źródło:: World Scientific News; 2020, 144; 384-396
2392-2192
Pojawia się w:: World Scientific News
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 4.

Tytuł:: Detection and identification of potentially toxic cyanobacteria in Polish water bodies
Autorzy:: Głowacka, Joanna
Szefel-Markowska, Magdalena
Waleron, Małgorzata
Łojkowska, Ewa
Waleron, Krzysztof
Powiązania:: https://bibliotekanauki.pl/articles/1039881.pdf
Data publikacji:: 2011
Wydawca:: Polskie Towarzystwo Biochemiczne
Tematy:: mcyB
microcystins
toxins
16S rRNA
Cyanobacteria
mcyE
rpoC1
Opis:: The main goal of this study was to determine the distribution of potentially toxic cyanobacteria in 39 selected Polish water bodies. From the water bodies with blooms and also from those in which blooms were not visible 87 samples were investigated. For the first time samples from ponds localized in villages with high agricultural activities were included. Lakes for which microcystin concentrations had been determined before were included as a reference for the research. The detection of cyanobacteria was conducted by microscopic observation as well as by PCR amplification of the rpoC1 gene fragment. Cyanobacteria were present in 75 out of 87 samples. The presence of potentially toxic cyanobacteria was detected by amplification of the mcyB and mcyE genes, which are involved in the biosynthesis of microcystins. Both genes were detected in 7 out of 9 blooms investigated. In the case of samples collected from water bodies in which blooms were not observed, the mcyB and mcyE genes were detected in 20 out of 36. In order to identify the cyanobacteria occurring in selected reservoirs, 16S plus ITS clone libraries were constructed. The method allowed distinguishing 18 different genotypes. After sequence analysis, cyanobacteria belonging to genera Microcystis, Planktothrix, Anabaena, Pseudanabaena, Synechocystis, Synechococcus and Woronichinia were identified. Results confirmed the usefulness of the rpoC1 and mcy genes for monitoring water bodies and detection of potentially toxic cyanobacteria. Application of molecular markers allowed detecting potentially toxic cyanobacteria before the bloom was visible. This is the first comprehensive study concerning cyanobacteria present in different types of Polish water bodies performed using molecular markers.
Źródło:: Acta Biochimica Polonica; 2011, 58, 3; 321-333
0001-527X
Pojawia się w:: Acta Biochimica Polonica
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 5.

Tytuł:: Microbial biodiversity in arable soils is affected by agricultural practices
Autorzy:: Wolińska, Agnieszka
Górniak, Dorota
Zielenkiewicz, Urszula
Goryluk-Salmonowicz, Agata
Kuźniar, Agnieszka
Stępniewska, Zofia
Błaszczyk, Mieczysław
Powiązania:: https://bibliotekanauki.pl/articles/972735.pdf
Data publikacji:: 2017
Wydawca:: Polska Akademia Nauk. Instytut Agrofizyki PAN
Tematy:: dgge
16s rrna gene
simpson diversity
bacterial communities
arable soils
Opis:: The aim of the study was to examine the differences in microbial community structure as a result of agricultural practices. Sixteen samples of cultivated and the same number of non-cultivated soils were selected. Gel bands were identified using the GelCompar software to create the presence-absence matrix, where each band represented a bacterial operational taxonomic unit. The data were used for principal-component analysis and additionally, the Shannon-Weaver index of general diversity, Simpson index of dominance and Simpson index of diversity were calculated. Denaturing gradient gel electrophoresis profiles clearly indicated differentiation of tested samples into two clusters: cultivated and non-cultivated soils. Greater numbers of dominant operational taxonomic units (65) in non-cultivated soils were noted compared to cultivated soils (47 operational taxonomic units). This implies that there was a reduction of dominant bacterial operational taxonomic units by nearly 30% in cultivated soils. Simpson dominance index expressing the number of species weighted by their abundance amounted to 1.22 in cultivated soils, whereas a 3-fold higher value (3.38) was observed in non-cultivated soils. Land-use practices seemed to be a important factors affected on biodiversity, because more than soil type determined the clustering into groups.
Źródło:: International Agrophysics; 2017, 31, 2; 259-271
0236-8722
Pojawia się w:: International Agrophysics
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 6.

Tytuł:: Metagenomic Analysis Reveals Microbial Communities in Lake Qarun – Egypt
Autorzy:: Yosef, Mahmoud Mohamed
Elrefy, Ali Mohamed
Elfeky, Fawzy Ali
Powiązania:: https://bibliotekanauki.pl/articles/2027812.pdf
Data publikacji:: 2022
Wydawca:: Polskie Towarzystwo Inżynierii Ekologicznej
Tematy:: bacterial community
Ion Torrent
Qarun Lake
16S rRNA high throughput
Opis:: Characterization of water quality in Lake Qarun indicated that the water is very poor for irrigation and aquatic life. At the same time, the bacterial community was represented mainly by five bacterial phyla with different proportions: Firmicutes (53%), Proteobacteria (33%), Bacteroidetes (7%), Actinobacteria (5%) and Thermi (1%). Furthermore, metagenomes prediction of bacterial communities using PICRUSt indicated important functional gene families associated with metabolism, environmental information, genetic information processing, and cellular processes. It is worth noting that Benzoate degradation had the highest average relative abundance, followed by aminobenzoate degradation among 18 individual KEGG pathways from xenobiotics biodegradation and metabolism which showed higher relative abundance. The obtained data indicate that a different source of pollution in Qarun Lakes has an impact on the bacterial community’s structure, as well as the biota and is expected to cause health problems.
Źródło:: Journal of Ecological Engineering; 2022, 23, 2; 70-76
2299-8993
Pojawia się w:: Journal of Ecological Engineering
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 7.

Tytuł:: Characteristics of selected molecular methods used in identification and assessment of genetic diversity of bacteria belonging to the genus Azotobacter
Autorzy:: Kozieł, Monika
Gałązka, Anna
Powiązania:: https://bibliotekanauki.pl/articles/2147979.pdf
Data publikacji:: 2019-09-30
Wydawca:: Instytut Uprawy Nawożenia i Gleboznawstwa – Państwowy Instytut Badawczy
Tematy:: Azotobacter
ITS PCR
16S rRNA gen
PCR MP
RAPD
ARDRA
Opis:: Modern molecular techniques have greatly increased our knowledge concerning phylogenetic and functional diversity of microorganisms inhabiting the soil environment. Soil ecosys-tem is relatively complex with a high level of microbiologically diversity. The application of traditional culture-based techniques dose not reflect the total diversity of microbial community in-habiting in soil environment. On the other hand commonly used molecular methods allow for quick and accurate identification and evaluation of the genetic diversity of microorganisms in-habiting this environment. Free-living bacteria belonging to the genus Azotobacter commonly occurring in soil. Azotobacter spp. are the subject of many studies conducted both in Poland and in the world. The interest in these bacteria is largely related to their properties very useful for agriculture. Owing to their capability of fixing atmospheric nitrogen and making it available to plants and production of plant growth promotion and fungicidal substances, they are used in the production of soil bacterial inoculants. In addition, these bacteria are an excellent indicator of soil fertil-ity, which is why they are often used as test microorganisms in many studies. The paper presents an overview of molecular mi-crobiological techniques used to identify and evaluate the genetic diversity of Azotobacter spp. in studies conducted both in Poland and across the world. The ITS PCR, PCR-RFLP methods and 16S rRNA gene amplification are used to identify bacteria of the ge-nus Azotobacter, and PCR MP, RAPD PCR and ARDRA are used to assess the genetic diversity of these microorganisms.
Źródło:: Polish Journal of Agronomy; 2019, 38; 37-45
2081-2787
Pojawia się w:: Polish Journal of Agronomy
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 8.

Tytuł:: Evidence of amorphous Ca-phosphate precipitate caused by bio mineralisation in 4-5th CE lime plasters of the previously submerged east coastal monument of Salvankuppam
Autorzy:: Singh, Manager R.
Kumar, S. Vinodh
Ganaraj, Kuntikana
Powiązania:: https://bibliotekanauki.pl/articles/2086560.pdf
Data publikacji:: 2021
Wydawca:: Polskie Towarzystwo Mineralogiczne
Tematy:: Amorphous Ca-phosphate
16S rRNA
Bio-mineralization
calcite
lime plasters
Opis:: The lime plasters of the excavated monument of Salvankuppam, previously submerged and exposed by the Tsunami occurred in the Indian Ocean on 26th December 2004 was studied with different analytical techniques. The temple is dated 4-5th century CE. The XRF, XRD, FTIR, NMR, SEM-EDX analysis of the lime plasters evidenced particular occurrence of phosphatised bacterial remains in saline conditions. The formation of amorphous Ca-phosphate by bio mineralization was identified in the plasters by the analyses. The plasters are made of air-lime with coarse aggregates and seashells inclusion as confirmed by the thermal and chemical analysis. The microstructure and morphological investigations of mineralized microbial structures by SEM-EDX indicated the formation of amorphous Ca-phosphate. The unordered and fibrous spherulites have hardened and reduced porosity of the plaster by bio mineralization as observed through MIP analysis. The 16S rRNA sequencing has identified the Pseudomonas strains mainly responsible for the clustering of amorphous Ca-phosphate particles around the bacterial colony.
Źródło:: Mineralogia; 2021, 52, 1; 19--30
1899-8291
1899-8526
Pojawia się w:: Mineralogia
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 9.

Tytuł:: Dynamika ilościowa AOB w procesie biologicznego oczyszczania odcieków składowiskowych w warunkach beztlenowych
Quantitative dynamics of AOB in the biological treatment of landfill leachate in anaerobic conditions
Autorzy:: Jurczyk, Ł.
Koc-Jurczyk, J.
Różalska, P.
Powiązania:: https://bibliotekanauki.pl/articles/296871.pdf
Data publikacji:: 2011
Wydawca:: Politechnika Częstochowska. Wydawnictwo Politechniki Częstochowskiej
Tematy:: odcieki składowiskowe
SBR
AOB
16S rRNA
Q-PCR
landfill leachate
Opis:: Składowanie odpadów, nawet na obiektach prawidłowo zaprojektowanych i eksploatowanych może stwarzać wiele zagrożeń dla środowiska. Jednym z najpoważniejszych jest powstawanie w obrębie składowiska odcieków, charakteryzujących się między innymi dużymi stężeniami azotu amonowego oraz znaczną zawartością trudno rozkładalnych związków organicznych. Podstawową metodą unieszkodliwiania odcieków składowiskowych jest ich oczyszczanie w reaktorach biologicznych. U podstaw tego procesu leży biochemiczny rozkład azotu amonowego przez mikroorganizmy wykazujące ekspresję genu monooksygenazy amoniaku, a jednym ze sposobów zwiększenia jego efektywności jest stosowanie różnych typów nośników stwarzających tym mikroorganizmom optymalne warunki życia. Odcieki wykorzystane w badaniach pochodziły ze składowiska odpadów komunalnych w Kozodrzy (woj. podkarpackie). Badania prowadzono w trzech sekwencyjnych reaktorach biologicznych o pojemności 2 l (SBR 1-3), w warunkach beztlenowych, w temperaturze 42°C i przy stałym czasie zatrzymania wynoszącym 6 d. SBR 1 pracował tylko z osadem czynnym zawieszonym, natomiast SBR 2 i 3 zostały wyposażone w wypełnienia z PCV o różnej średnicy porów (odpowiednio 2 ÷ 3 oraz 4 ÷ 5 mm). W pobranych z reaktorów próbkach osadu badano, za pomocą techniki ilościowej łańcuchowej reakcji polimerazy (Q-PCR), zawartość kopii genu 16S rRNA o sekwencji charakterystycznej dla wszystkich znanych β-proteobakterii mających zdolność do utleniania amoniaku. Porównując w badanych próbkach dynamikę ilości badanego genu, stwierdzono, że wypełnienie zastosowane w SBR 2 powodowało najmniejsze wahania liczebności bakterii w procesie ich adaptacji do warunków technologicznych. Efektywność usuwania azotu amonowego we wszystkich reaktorach miała związek z ilością kopii badanego genu.
Waste disposal, even on properly designed and operated landfills may be environmentally hazardous. One of the most onerous aspects of landfilling is formation of the leachate, characterized by high concentrations of ammonia nitrogen and organic compounds. One of the most common method applied for nitrogen neutralization in landfill leachate is biological treatment based on biochemical decomposition of an ammonia by micro-organisms expressing gene of ammonia monooxygenase. The way to increasing efficiency of this process is the application of different types of fillings creating optimal conditions for microorganisms life. Leachate used in the study came from a large scale municipal waste landfill in Kozodrza (podkarpackie province, Poland). The research was conducted in three sequential batch reactors of 2 l (SBR 1-3), in anaerobic conditions, high temperature (42°C) and a constant HRT of 6 d. SBR 1 ran with suspended activated sludge, while the SBR 2 and 3 were equipped with PVC filling of different pore diameters (respectively 2 ÷ 3 and 4 ÷ 5 mm). The samples of sludge were examined for number of 16S rDNA copies characterized for ammonia oxidizing β-proteobacteria. Comparing the quantitative dynamics of 16S rRNA gene in samples it was found that fillings used in the SBR 2 resulted in slightest hesitation of the number of bacteria during the process of their adaptation to technological conditions. The ammonia nitrogen removal efficiency in all reactors was related to the number of 16S rRNA gene copies.
Źródło:: Inżynieria i Ochrona Środowiska; 2011, 14, 4; 309-322
1505-3695
2391-7253
Pojawia się w:: Inżynieria i Ochrona Środowiska
Dostawca treści:: Biblioteka Nauki

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Skocz do pozycji: 10.

Tytuł:: First insight into microbial community composition in a phosphogypsum waste heap soil
Autorzy:: Zielińska, Sylwia
Radkowski, Piotr
Ossowski, Tadeusz
Ludwig-Gałęzowska, Agnieszka
Łoś, Joanna
Łoś, Marcin
Powiązania:: https://bibliotekanauki.pl/articles/1038561.pdf
Data publikacji:: 2017
Wydawca:: Polskie Towarzystwo Biochemiczne
Tematy:: microbial community
16S rRNA gene
soil sample
postproduction waste
phosphogypsum
reclamation
Opis:: The aim of this study was to investigate the soil microbial communities of a phosphogypsum waste heap. The soil microbial community structures can differ over time, as they are affected by the changing environmental conditions caused by a long-term exposure to different kinds of pollutions, like is the case of soil in the post-production waste area in Wiślinka (in the northern part of Poland) currently undergoing restoration. Our analyses indicated that the most abundant phyla were Proteobacteria, Acidobacteria, and Actinobacteria, and generally such an abundance is common for most of the studied soils. The most dominant class were Alphaproteobacteria, with their participation in 33.46% of the total reads. Among this class, the most numbered order was Sphingomonadales, whereas among this order the Sphingomonadaceae family was the most abundant one. The Sphingomonadaceae family is currently in the center of interest of many researchers, due to the ability of some of its members to utilize a wide range of naturally occurring organic compounds and many types of environmental contaminants. This kind of knowledge about microbial populations can support efforts in bioremediation and can improve monitoring changes in the contaminated environments.
Źródło:: Acta Biochimica Polonica; 2017, 64, 4; 693-698
0001-527X
Pojawia się w:: Acta Biochimica Polonica
Dostawca treści:: Biblioteka Nauki

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