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Wyszukujesz frazę "Ganguli, S." wg kryterium: Autor

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    Wyświetlanie 1-3 z 3
    Tytuł:
    Exploring computational protein fishing (CPF) to identify argonaute proteins from sequenced crop genomes
    Autorzy:
    Basu, P.
    Ganguli, S.
    Gupta, S.
    Datta, A.
    Powiązania:
    https://bibliotekanauki.pl/articles/11424.pdf
    Data publikacji:
    2015
    Wydawca:
    Przedsiębiorstwo Wydawnictw Naukowych Darwin / Scientific Publishing House DARWIN
    Tematy:
    protein
    argonaute
    RNA interference
    Arabidopsis
    Oryza
    crop plant
    plant genome
    Opis:
    Plant RNA interference has been a very well studied phenomenon since its discovery. We are well versed with the types of small noncoding RNAs that are prevalent in the plant systems and their pathways of biogenesis and subsequent actions. However, apart from model plant systems such as Arabidopsis and Oryza, very little information is available regarding the other members of the RNA interference machinery; specially Argonaute proteins which acts as the major stabilizing factor for execution of the interference. This work focuses on the exploration of the sequenced crop genomes available on the web using a hybrid approach of computational protein fishing and genome mining. The results indicate that this hybrid approach was successful in the identification of argonaute proteins in the crop genomes under study.
    Źródło:
    International Letters of Natural Sciences; 2015, 06
    2300-9675
    Pojawia się w:
    International Letters of Natural Sciences
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Structural analyses of AC4 protein of Sri Lankan cassava mosaic virus
    Autorzy:
    Gupta, S.
    Ganguli, S.
    Basu, P.
    Datta, A.
    Powiązania:
    https://bibliotekanauki.pl/articles/11568.pdf
    Data publikacji:
    2015
    Wydawca:
    Przedsiębiorstwo Wydawnictw Naukowych Darwin / Scientific Publishing House DARWIN
    Tematy:
    structural analysis
    AC4 protein
    cassava mosaic virus
    RNA silencing
    viral infection
    viral suppressor
    geminivirus
    post transcriptional gene silencing
    Opis:
    RNA silencing is one of the important phenomenon in plant defense mechanism, it actively protect host plants against viral infections. Existing viruses must have developed counter defense strategies to survive this arms race. Such counter defense strategy is the viral silencing suppressor (VSRs) which have been reported to directly interfere with the various steps leading to the interference of viral RNAs. Most identified VSRs are multifunctional, besides being RNA-silencing suppressors, they often perform essential roles by functioning as coat proteins, helper components for viral transmission, replicases and movement proteins, proteases or transcriptional regulators. One such identified VSR is AC4 of Sri Lankan cassava mosaic virus strain. Trivial knowledge about the structure –function relationship of this VSR leads to this work, where we focus on the structure generation by modelling to identify the mode of interactions with the various effector molecules of the silencing pathways. Structural analyses have been performed to screen interacting residues. Results indicate conserved structural features which signify propensity of functional interactions and further shows that this VSR can be a potent tool for the analysis of RNA silencing mechanisms and the relationships between different silencing pathways and VSRs.
    Źródło:
    International Letters of Natural Sciences; 2015, 06
    2300-9675
    Pojawia się w:
    International Letters of Natural Sciences
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Isolation and computational characterization of glutathione peroxidase gene from an aquatic fern - Salvinia molesta
    Autorzy:
    Rahaman, S.
    Singh, P.K.
    Basu, P.
    Gupta, S.
    Basu, M.
    Ganguli, S.
    Powiązania:
    https://bibliotekanauki.pl/articles/11200.pdf
    Data publikacji:
    2016
    Wydawca:
    Przedsiębiorstwo Wydawnictw Naukowych Darwin / Scientific Publishing House DARWIN
    Opis:
    Pteridophytes and more specifically ferns represent a large but threatened group of plants which often serve as important environmental markers for pollution. Reports regarding stress responses in ferns are rare, apart from a few studies involving the ecological distribution and molecular marker studies. This work isolates a glutathione peroxidase enzyme from an aquatic fern widely distributed in fresh and polluted water bodies adjacent to sources of environmental polluted sources. Further computational analyses were performed to study the structure of the protein encoded by the open reading frame. Results indicate the presence of a large number of binding pockets which serve as important binding sites in the interactions with the cognate ligands.
    Źródło:
    International Letters of Natural Sciences; 2016, 51
    2300-9675
    Pojawia się w:
    International Letters of Natural Sciences
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
      Wyświetlanie 1-3 z 3

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