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Wyświetlanie 1-5 z 5
Tytuł:
Gatunki Phytophthora i Pythium w glebie i w korzeniach dębu szypułkowego na terenach popowodziowych w Nadleśnictwie Wołów
Phytophthora and Pythium species in soils and in roots of the pedunculate oaks in periodically flooded areas in Wolow Forest District
Autorzy:
Kwaśna, H.
Szewczyk, W.
Behnke-Borowczyk, J.
Powiązania:
https://bibliotekanauki.pl/articles/989782.pdf
Data publikacji:
2015
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
tereny pokleskowe
tereny popowodziowe
drzewostany debowe
drzewa lesne
dab szypulkowy
Quercus robur
korzenie
gleby lesne
grzyby
Phytophthora
Phytium
wystepowanie
Nadlesnictwo Wolow
pedunculate oak
fungi
globisporangium
oomycota
flood
phytophthora
pythium
Opis:
Phytophthora and Pythium species (Oomycota) are known to be serious pathogens of forest trees. Little is known, however, about their presence in Polish oak forests and their role in the oak decline, especially in the flooded areas. The aim of this study was (1) to detect and compare populations of microorganisms from Oomycota and fungi in roots and soil of healthy and declining pedunculate 30−126 years old oak stands, which had been flooded by the Odra River for three months in 1997 and one month in 2010, (2) to demonstrate the relationship between different chemical factors of soil and the occurrence of microorganisms, and (3) to assess the contribution of Oomycota to oak decline. Study was carried out in Wołów Forest District (south−western Poland). Microorganisms were isolated from fine (1−5 mm in diameter) roots and non−rhizosphere soil collected from 0−50 cm horizon. Isolation procedure from roots included surface sterilization and plating the root segments on the nutrient agar. An oak leaf baiting method was used for isolation of Oomycota from soil. Identification of microorganisms was based on morphology and sequencing of the ITS1/2 rDNA. Oomycota was represented by: Globisporangium, Phytophthora and Pythium and fungi mostly by: Aspergillus, Chaetosphaeria, Cylindrocarpon, Mortierella, Mucor, Penicillium, Trichoderma and Umbelopsis. Globisporangium attrantheridium (syn. Pythium attrantheridium) occurred locally and was found in roots of only one flooded oak. This is the first record of this species on oak and in Poland. G. intermedium, P. gibbosa/P. gregata, P. plurivora and Pythium sp. were found in soil of flooded and non−flooded (control) oak stands. The organisms occurred in podzolized brown soils, brown alluvial soils and gley soils that had most nitrogen (21−60 mg/kg), various amounts of calcium (61.1−347.6 mg/100g) and moderate acidity (pH=3.85−4.2). There was often a significant association between exposure to flood and the health status of oak trees assessed by the scale of defoliation. Oomycota seemed to be only moderately associated with increased tree defoliation as a symptom of oak decline.
Źródło:
Sylwan; 2015, 159, 07; 531-539
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Pory roku a zbiorowisko grzybów zasiedlających pniaki czeremchy amerykańskiej
Seasonal changes in fungi colonies inhabiting black cherry stumps
Autorzy:
Baranowska, M.
Korzeniewicz, R.
Kartawik, N.
Behnke-Borowczyk, J.
Powiązania:
https://bibliotekanauki.pl/articles/979585.pdf
Data publikacji:
2019
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
drzewa lesne
gatunki inwazyjne
czeremcha amerykanska
Prunus serotina
fitopatologia
pniaki czeremchy
grzyby zasiedlajace drewno
grzyby mikroskopowe
identyfikacja
system Illumina
pory roku
illumina system
invasive species
dead wood
saprotrophs
wood−decay fungus
Opis:
Black cherry is an important invasive species in forest ecosystems in Poland. It developed mainly in Scots pine stands. The aim of the study was to identify microscopic fungi colonies inhabiting black cherry stumps. In the spring of 2017, wood samples were collected from stumps created after cutting in each subsequent month of 2016 in the Podanin Forest District (19°28'00'E, 52°04'00'N). Stumps up to 5 cm and more than 5 cm in diameter were selected for the study. In total, 72 discs from the first stage of the decomposition of wood were collected. The discs were drilled to obtain fine sawdust for further analysis. The trials were divided into four periods. DNA isolation was performed using the Plant Genomic DNA purification kit (ThermoScientific). The ITS1/2 rDNA region was used for species identification. The analysis was carried out using specific primers. The obtained product was purified and sequenced using the Illumina SBS technology. The resulting sequence was compared using the BLAST algorithm with reference sequences from the NCBI database. The communities of fungi inhabiting the black cherry stumps differed from each other. The highest number of taxa was identified in samples from stumps over 5 cm sheared in autumn and winter, while the lowest in stumps up to 5 cm sheared in spring and winter. Fungi belonging to the Ascomycota and Basidiomycota, Blastocladiomycota, Glomeromycota, Zygomycota and non−cultivable fungi and organisms belonging to other kingdoms were identified. Saprophytes from Menispora sp. dominated on the analysed stumps. The collection of fungi of larger stumps was more diverse and more numerous than on stumps with a smaller diameter. A greater diversity of taxa was distinguished by the stumps of tree fallen in the growing season. The majority of the analyzed samples were dominated by Ascomycota. Basidiomycota clusters dominated in the winter. The predominant share of saprotrophs shows the distribution of stumps. The most desirable effect of the research would be the indication of naturally occurring saprotroph, whose operation would reduce the black cherry’s yield strength. The applied method of sequencing based on the Illumina System was effective to determine the composition of the fungal population.
Źródło:
Sylwan; 2019, 163, 10; 872-880
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Bioróżnorodność grzybów igliwia sosny zwyczajnej porażonej przez jesienną osutkę sosny
Biodiversity of fungi community on Scots pine needles infected of the autumn needle cast
Autorzy:
Behnke-Borowczyk, J.
Powiązania:
https://bibliotekanauki.pl/articles/985795.pdf
Data publikacji:
2018
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
fitopatologia lesna
drzewa lesne
sosna zwyczajna
Pinus sylvestris
jesienna osutka sosny
igliwie sosnowe
grzyby zasiedlajace igly
roznorodnosc biologiczna
zbiorowiska grzybow
metody badan
system Illumina
Opis:
Needle casts belong to the fungal diseases of the assimilation apparatus, which affect the success and quality of the renewal of pine stands. The aim of this study was to investigate the diversity of communities of fungi, which occurred on Scots pine needles. Samples were collected in autumn 2015 from Scots pine saplings from Przedborów Forest District (17°58'34'E 51°31'57'N). Material was sequenced for DNA using Ilumina system. The results were compared with the NCBI base sequences. The results show significant dominance of fungi from Ascomycota division. The taxa responsible for the occurrence of Scots pine needle cast disease were also found. In this group, a significant share characterized the following species: Lophodermium pinastri, Cyclaneusma minus, Lophodermium seditiosum, Sydowia polyspora, Cenangium ferruginosum and Beauveria bassiana. The presented research should enhance the knowledge about the diversity of fungi inhabiting pine needles and about the contribution of pathogenic taxa, which can be used in a more efficient use of protective measures in forest management practice.
Źródło:
Sylwan; 2018, 162, 04; 288-294
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Zastosowanie regionu ITS1/2 rDNA i 18S rDNA do badania mykobioty gleby leśnej
Use of ITS1/2 rDNA and 18S rDNA in studies of the forest soil mycobiota
Autorzy:
Behnke-Borowczyk, J.
Kwaśna, H.
Powiązania:
https://bibliotekanauki.pl/articles/989532.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
gleby lesne
mikroorganizmy glebowe
grzyby glebowe
struktura zbiorowisk
metody badan
metody molekularne
DNA rybosomalny
region ITS1/2
region 18S
detection
forest
its1/2 rdna
ns1
ns2
18s rdna
microorganisms
mycobiota
soil
Opis:
The aim of the studies was to check the usefulness of ITS1/2 rDNA and 18S rDNA regions in the molecular investigation of forest soil microbiota structure. Soil studied, originated from a 1−year−old plantation and a 40−year old stand of Scots pine located in Bierzwnik and Międzychów forest districts located 200 km apart. The hypothesis assumed that both approaches lead to the discovery of abundant microbiota communities with different structures and with rare common species. The environmental DNA was extracted with a Power Soil ® DNA Isolation Kit from two soil samples in each site. The ITS1/2 rDNA was amplified with specific primers ITS1 and ewfitsrev 1, and 18S rDNA with universal primers NS1 and NS2. PCR products were cloned into pGEM−T Easy. Inserts were primarily selected in blue/white screening on a X−gal medium. Representative clones were further selected in two separate RFLP analyses with HhaI and BsuRI restriction enzymes. Representative clones purified and sequenced using the Sanger Method in the DNA Research Centre (Poznań). Each sequence was identified to the lowest taxonomic rank. Ninety to 233 clones with DNA of 5−44 taxa including 3−37 taxa of fungi were obtained from 4 samples of soil. After application of ITS1/2 rDNA and 18S rDNA, the fungal DNA was detected respectively in 89,60−100,00% and 11,77−64,8% clones and the number of fungal species detected was respectively 12−37 and 3−19. Fungi were represented by four orders: Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota. Both primers also amplified also DNA of other organisms (mostly from Animalia and Protista Kingdom) represented by 0−9 taxa. If compared, the application of forest soil microbiota structure with ITS1/2 rDNA and 18S rDNA led to detect a lower abundance of fungi and a bigger abundance of other organisms. Considering the higher number of clones and taxa recognized, the region of ITS1/2 rDNA was more effective in the studies of the soil microbiota structure. The region of 18S rDNA was efficient in local detection of Chytridiomycota and Zygomycota and of rare species of fungi from Ascomycota and Basidiomycota. Despite the deficiency of NCBI database the use of the 18S rDNA region in studies on fungal community the region should be included in molecular studies of fungal diversity. It is concluded that studies on the biodiversity of soil microorganisms need the application of a few independent methods of detection and identification.
Źródło:
Sylwan; 2016, 160, 07; 564-572
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Wpływ metodyki badań na ocenę struktury zbiorowisk mikroorganizmów w glebie leśnej
Effect of the methodology of studies on the structure of the microorganisms communities in the forest soil
Autorzy:
Behnke-Borowczyk, J.
Kwaśna, H.
Powiązania:
https://bibliotekanauki.pl/articles/989286.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Leśne
Tematy:
lesnictwo
gleby lesne
mikroorganizmy glebowe
grzyby mikroskopowe
struktura zbiorowisk
metodyka badan
metody klasyczne
metody molekularne
startery NS1
startery NS2
DNA
region 18S
classical method of isolation
fungi
microorganisms
ns1
ns2
18s rdna
soil
Opis:
Two different communities of microorganisms were identified in soils by application of the classical method of fungi isolation (soil dilution, culturing on artificial media, morphotyping) and a molecular method (extraction of the environmental DNA, amplification with universal primers NS1 and NS2, cloning and sequencing of representative clones). No organisms were common to both communities. Apart from rare representatives of the Animalia, communities included single fungus−like Eucarya belonging to the Protista, Class Oomycota, and numerous fungi belonging to Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota orders. In total, 88 species were identified in four soil samples. Fungi were mostly Ascomycota. The classical method was particularly effective in detection of fungi important for creation of phytosanitary conditions of soil, i.e. antagonists (Penicillium, Tolypocladium and Trichoderma) and potential stimulants (dark−pigmented Hormiactis candida, Humicola spp. and Phialophora spp.) of phytopathogens (including the common forest genera Armillaria and Heterobasidion). Application of the classical method allowed the detection of mycorrhizal Ascomycota from the genus Oidiodendron. Application of the molecular method allowed the detection of 13 mycorrhizal Basidiomycota. Although primers NS1 and NS2 were designed from a match with DNA of culturable organisms, they also amplified the DNA of non−culturable organisms. This emphasizes their potential usefulness in studies of the biodiversity of microorganisms in environmental samples. The shortage of reference sequences in the database discourages use of the 18S rDNA region in studies on fungal communities. The studies on the biodiversity of microorganisms need the application of a few independent methods of detection and identification.
Źródło:
Sylwan; 2016, 160, 06; 492-503
0039-7660
Pojawia się w:
Sylwan
Dostawca treści:
Biblioteka Nauki
Artykuł
    Wyświetlanie 1-5 z 5

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