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    Wyświetlanie 1-5 z 5
    Tytuł:
    Zastosowanie regionu ITS1/2 rDNA i 18S rDNA do badania mykobioty gleby leśnej
    Use of ITS1/2 rDNA and 18S rDNA in studies of the forest soil mycobiota
    Autorzy:
    Behnke-Borowczyk, J.
    Kwaśna, H.
    Powiązania:
    https://bibliotekanauki.pl/articles/989532.pdf
    Data publikacji:
    2016
    Wydawca:
    Polskie Towarzystwo Leśne
    Tematy:
    lesnictwo
    gleby lesne
    mikroorganizmy glebowe
    grzyby glebowe
    struktura zbiorowisk
    metody badan
    metody molekularne
    DNA rybosomalny
    region ITS1/2
    region 18S
    detection
    forest
    its1/2 rdna
    ns1
    ns2
    18s rdna
    microorganisms
    mycobiota
    soil
    Opis:
    The aim of the studies was to check the usefulness of ITS1/2 rDNA and 18S rDNA regions in the molecular investigation of forest soil microbiota structure. Soil studied, originated from a 1−year−old plantation and a 40−year old stand of Scots pine located in Bierzwnik and Międzychów forest districts located 200 km apart. The hypothesis assumed that both approaches lead to the discovery of abundant microbiota communities with different structures and with rare common species. The environmental DNA was extracted with a Power Soil ® DNA Isolation Kit from two soil samples in each site. The ITS1/2 rDNA was amplified with specific primers ITS1 and ewfitsrev 1, and 18S rDNA with universal primers NS1 and NS2. PCR products were cloned into pGEM−T Easy. Inserts were primarily selected in blue/white screening on a X−gal medium. Representative clones were further selected in two separate RFLP analyses with HhaI and BsuRI restriction enzymes. Representative clones purified and sequenced using the Sanger Method in the DNA Research Centre (Poznań). Each sequence was identified to the lowest taxonomic rank. Ninety to 233 clones with DNA of 5−44 taxa including 3−37 taxa of fungi were obtained from 4 samples of soil. After application of ITS1/2 rDNA and 18S rDNA, the fungal DNA was detected respectively in 89,60−100,00% and 11,77−64,8% clones and the number of fungal species detected was respectively 12−37 and 3−19. Fungi were represented by four orders: Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota. Both primers also amplified also DNA of other organisms (mostly from Animalia and Protista Kingdom) represented by 0−9 taxa. If compared, the application of forest soil microbiota structure with ITS1/2 rDNA and 18S rDNA led to detect a lower abundance of fungi and a bigger abundance of other organisms. Considering the higher number of clones and taxa recognized, the region of ITS1/2 rDNA was more effective in the studies of the soil microbiota structure. The region of 18S rDNA was efficient in local detection of Chytridiomycota and Zygomycota and of rare species of fungi from Ascomycota and Basidiomycota. Despite the deficiency of NCBI database the use of the 18S rDNA region in studies on fungal community the region should be included in molecular studies of fungal diversity. It is concluded that studies on the biodiversity of soil microorganisms need the application of a few independent methods of detection and identification.
    Źródło:
    Sylwan; 2016, 160, 07; 564-572
    0039-7660
    Pojawia się w:
    Sylwan
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Grzyby glebowe i ich znaczenie
    Significance of the soil fungi
    Autorzy:
    Behnke-Borowczyk, J.
    Kwaśna, H.
    Powiązania:
    https://bibliotekanauki.pl/articles/1009423.pdf
    Data publikacji:
    2010
    Wydawca:
    Polskie Towarzystwo Leśne
    Tematy:
    gleby
    mikrobiologia gleb
    grzyby glebowe
    funkcje biologiczne
    fungi
    soil
    Opis:
    Fungi in soil perform important services related to nutrient cycling, water dynamics and disease suppression. Along with bacteria, they are important as decomposers in the soil food network. Fungi convert hard−to−digest organic material into forms that other organisms can use. They can immobilize or retain nutrients in the soil. Secondary fungal metabolites have the fungistatic properties and are used in biocontrol processes. The hyphae physically binds soil particles together, creating stable aggregates that help increase water infiltration and soil water retention capacity. Fungi help to increase the accumulation of humic−acid rich organic matter that is resistant to degradation and may stay in the soil for hundreds of year.
    Źródło:
    Sylwan; 2010, 154, 12; 846-850
    0039-7660
    Pojawia się w:
    Sylwan
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Wpływ metodyki badań na ocenę struktury zbiorowisk mikroorganizmów w glebie leśnej
    Effect of the methodology of studies on the structure of the microorganisms communities in the forest soil
    Autorzy:
    Behnke-Borowczyk, J.
    Kwaśna, H.
    Powiązania:
    https://bibliotekanauki.pl/articles/989286.pdf
    Data publikacji:
    2016
    Wydawca:
    Polskie Towarzystwo Leśne
    Tematy:
    lesnictwo
    gleby lesne
    mikroorganizmy glebowe
    grzyby mikroskopowe
    struktura zbiorowisk
    metodyka badan
    metody klasyczne
    metody molekularne
    startery NS1
    startery NS2
    DNA
    region 18S
    classical method of isolation
    fungi
    microorganisms
    ns1
    ns2
    18s rdna
    soil
    Opis:
    Two different communities of microorganisms were identified in soils by application of the classical method of fungi isolation (soil dilution, culturing on artificial media, morphotyping) and a molecular method (extraction of the environmental DNA, amplification with universal primers NS1 and NS2, cloning and sequencing of representative clones). No organisms were common to both communities. Apart from rare representatives of the Animalia, communities included single fungus−like Eucarya belonging to the Protista, Class Oomycota, and numerous fungi belonging to Chytridiomycota, Zygomycota, Ascomycota and Basidiomycota orders. In total, 88 species were identified in four soil samples. Fungi were mostly Ascomycota. The classical method was particularly effective in detection of fungi important for creation of phytosanitary conditions of soil, i.e. antagonists (Penicillium, Tolypocladium and Trichoderma) and potential stimulants (dark−pigmented Hormiactis candida, Humicola spp. and Phialophora spp.) of phytopathogens (including the common forest genera Armillaria and Heterobasidion). Application of the classical method allowed the detection of mycorrhizal Ascomycota from the genus Oidiodendron. Application of the molecular method allowed the detection of 13 mycorrhizal Basidiomycota. Although primers NS1 and NS2 were designed from a match with DNA of culturable organisms, they also amplified the DNA of non−culturable organisms. This emphasizes their potential usefulness in studies of the biodiversity of microorganisms in environmental samples. The shortage of reference sequences in the database discourages use of the 18S rDNA region in studies on fungal communities. The studies on the biodiversity of microorganisms need the application of a few independent methods of detection and identification.
    Źródło:
    Sylwan; 2016, 160, 06; 492-503
    0039-7660
    Pojawia się w:
    Sylwan
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Metody molekularne stosowane w badaniu różnorodności mikroorganizmów glebowych
    Molecular methods used in studies of diversity of the soil microorganisms
    Autorzy:
    Behnke-Borowczyk, J.
    Kwaśna, H.
    Belka, M.
    Powiązania:
    https://bibliotekanauki.pl/articles/1006468.pdf
    Data publikacji:
    2012
    Wydawca:
    Polskie Towarzystwo Leśne
    Tematy:
    mikroorganizmy glebowe
    identyfikacja
    roznorodnosc biologiczna
    metody badan
    metody molekularne
    ekstrakcja DNA
    amplifikacja DNA
    biodiversity
    microbiota
    molecular methods
    soil
    Opis:
    Application of the correct methods of study is essential for a proper description and understanding of natural communities of microorganisms and their relationships. Classical methods used for detection and identification of soil microorganisms resulted in underestimation of the microbiota. It has been claimed that classical methods, based mainly on morphology, led to the identification of only 1% of the soil microbiota, usually species that predominate in culture because of their fast growth and abundant sporulation. Molecular methods allow rapid, accurate, sensitive and cost−effective identification and enumeration of microorganisms. They are designed to replace and/or support classical approaches. This review summarizes some of the current and emerging nucleic acid−based molecular approaches used for detection, discrimination and quantification of microbes in the environment, mostly in soil.
    Źródło:
    Sylwan; 2012, 156, 04; 294-304
    0039-7660
    Pojawia się w:
    Sylwan
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Fungal pathogens and antagonists in root-soil zone in organic and integrated systems of potato production
    Autorzy:
    Lenc, L.
    Kwasna, H.
    Jeske, M.
    Jonczyk, K.
    Sadowski, C.
    Powiązania:
    https://bibliotekanauki.pl/articles/66844.pdf
    Data publikacji:
    2016
    Wydawca:
    Polska Akademia Nauk. Czytelnia Czasopism PAN
    Tematy:
    fungal pathogen
    antagonist
    root
    soil
    organic system
    integrated system
    potato
    biological control
    cropping system
    fungi
    Oomycota
    Opis:
    Occurrence of culturable Fungi and Oomycota in root-soil habitat of potato cv. Owacja in organic and integrated production systems at Osiny (northern Poland) was compared in 2008–2010. The densities of both pathogens were significantly greater in the organic system. The eudominant fungal taxa (with frequency > 10% in at least one habitat) included species of Fusarium + Gibberella + Haematonectria, Penicillium, Phoma and Trichoderma. The dominant taxa (with frequency 5–10%) included species from 13 genera. In the rhizoplane, rhizosphere and non-rhizosphere soil, the total density of potential pathogens was greater in the integrated system, and of potential antagonists in the organic system. Among eudominant and dominant pathogens, Fusarium oxysporum and Gibellulopsis nigrescens occurred at greater density in the integrated system and Haematonectria haematococca and Phoma spp. in the organic system. Among eudominant antagonists, Trichoderma species occurred at greater density in the organic system. The organic system provided more disease suppressive habitat than the integrated system. The occurrence of brown leaf spot and potato blight was however similar in both systems. The mean yield of organic potatoes (24.9 t · ha–1) was higher than the mean organic potato yield in Poland (21.0 t · ha–1) and similar to the mean in other European countries (Germany 25.1 t · ha–1, Great Britain 25.0 t · ha–1). The organic system, based on a 5-year rotation, with narrow-leafed lupin, white mustard and buckwheat as a cover crop, inorganic fertilization based on ground rock phosphate + potassium sulphate, and biological and chemical control of insects and diseases (Bacillus thuringiensis ssp. tenebrionis + copper hydroxide + copper oxychloride), may be recommended for use in central Europe.
    Źródło:
    Journal of Plant Protection Research; 2016, 56, 2
    1427-4345
    Pojawia się w:
    Journal of Plant Protection Research
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
      Wyświetlanie 1-5 z 5

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