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Wyszukujesz frazę "Next Generation Sequencing" wg kryterium: Temat


Wyświetlanie 1-2 z 2
Tytuł:
Microbiological characterization of stable resuspended dust
Autorzy:
Kováts, Nora
Horváth, Eszter
Jancsek-Turóczi, Beatrix
Hoffer, András
Gelencsér, András
Urbán, Péter
Kiss, Írisz E.
Bihari, Zoltán
Fekete, Csaba
Powiązania:
https://bibliotekanauki.pl/articles/2177051.pdf
Data publikacji:
2015-11-23
Wydawca:
Instytut Medycyny Pracy im. prof. dra Jerzego Nofera w Łodzi
Tematy:
stable
air quality
dust
microbial community
next generation sequencing
pathogens
Opis:
Objectives Air quality in the stables is characterized by elevated level of dust and aeroallergens which are supposed to directly cause or exacerbate several respiratory disorders. The most often recognized problem is recurrent airway obstruction (RAO), previously known as chronic obstructive pulmonary disease (COPD). There is some indication that aeroallergens (among them endotoxins) may also cause inflammation in human airways and may exceed safe levels in stables. Monitoring studies have covered mainly the determination of the concentration of respirable particles and of culturable fungi and their toxins. However, these particles do not only directly affect the respiratory system, but might act as a carrier conveying toxic contaminants and biological agents such as bacteria. In a typical, 20-horse Hungarian stable, microbial community of respirable fraction of resuspended dust has been characterized to reveal if these particles convey hazardous pathogenic bacteria, posing risk to either horses or staff. Material and Methods Resuspended dust was sampled using a mobile instrument. The instrument contains a PARTISOL-FRM model 2000 sampler that was operated at a flow rate of 16.7 l/min and a cyclone separator which collected the particulate matter with an aerodynamic size between 1 μm and 10 μm (PM 1–10) fraction. Microbial taxa were identified by culture-independent next generation sequencing (NGS) of variable 16S ribosomal ribonucleic acid (rRNA) gene regions. Results In total, 1491 different taxa were identified, of them 384 were identified to species level, 961 to genus level. The sample was dominated by common ubiquitous soil and organic material-dwelling taxa. Conclusions Pathogens occurred at low abundance, and were represented by mostly facultative human pathogens, with the prevalence of Staphylococcus species.
Źródło:
International Journal of Occupational Medicine and Environmental Health; 2016, 29, 3; 375-380
1232-1087
1896-494X
Pojawia się w:
International Journal of Occupational Medicine and Environmental Health
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Multipleksowa detekcja gatunków Phytophthora przy użyciu platformy Fluidigm
Multiplex detection of Phytophthora spp. using the Fluidigm platform
Autorzy:
Sikora, K.
Oszako, T.
Kubiak, K.
Nowakowska, J.A.
Malewski, T.
Powiązania:
https://bibliotekanauki.pl/articles/2142612.pdf
Data publikacji:
2020
Wydawca:
Instytut Badawczy Leśnictwa
Tematy:
forest soil
oomycetes
oak dieback
pathogens
next generation sequencing
gleby leśne
oomycety
zamieranie dębów
patogeny
sekwencjonowanie nowej generacji
Opis:
The genus Phytophthora plays an important role not only in agriculture but also in forest ecosystems. As the number of known Phytophthora species continues to grow, identifying new isolates in this genus has become increasingly challenging even by DNA sequencing. Therefore, the development of proper techniques for detection and identification is crucial for monitoring and control of these pathogens in the forestry sector. In recent years, new molecular methods using innovative approaches have indeed been developed. However, the majority of these methods was designed to detect single Phytophthora species. Techniques that are able to target multiple species would offer advantages, especially for the assessment of Phytophthora diversity in the environment. This paper describes a multiplex assay for the identification of eight Phytophthora isolates, down to the species level, based on a Fluidigm platform employing pyrosequencing. The obtained results showed that for an accurate determination of the species, it is sufficient to know the sequence of two markers, ITS and COX1. The sensitivity of this test is sufficient to identify Phytophthora in a pure culture. Unfortunately, analysis based on a pyrosequencing platform does not provide enough data to simultaneous identify multiple Phytophthora species in samples collected in the field. This problem could be resolved in the future by sequencing using more efficient platforms like Illumina or IonTorrent.
Źródło:
Leśne Prace Badawcze; 2020, 81, 4; 161-166
1732-9442
2082-8926
Pojawia się w:
Leśne Prace Badawcze
Dostawca treści:
Biblioteka Nauki
Artykuł
    Wyświetlanie 1-2 z 2

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