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Wyświetlanie 1-2 z 2
Tytuł:
Marker-assisted selection for scald (Rhynchosporium commune L.) resistance gene(s) in barley breeding for dry areas
Autorzy:
Sayed, H.
Baum, M.
Powiązania:
https://bibliotekanauki.pl/articles/65161.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
marker-assisted selection
marker aided selection zob.marker-assisted selection
leaf blotch
scald zob.leaf blotch
Rhynchosporium commune
resistance gene
barley
plant breeding
dry climate
foliar disease
plant disease
fungal disease
Opis:
Barley scald, caused by Rhynchosporium commune is one of the most prevalent diseases in barley (Hordeum vulgare L.) worldwide. The primary loss from scald is reduced yield, which can exceed 25% in dry areas. In our earlier studies, we developed a low-resolution linkage map for recombinant inbred lines of the cross Tadmor/WI2291. Quantitative trait loci (QTLs) for scald were localized on chromosomes 2H and 3H flanked by Simple Sequence Repeat (SSR) markers HVM54 and Bmac0093b on 2H and HVLTPP8, HVM62 and Bmag0006 on 3H. These chromosome 3H markers were found to be located close to the Rrs1 − R. commune resistance gene(s) on chromosome 3H. In this study, 10 homozygous resistant and 10 homozygous susceptible plants each from the F7 population of Tadmor/ Sel160, a panel of 23 barley varieties used routinely in the International Centre for Agricultural Research in the Dry Areas (ICARDA) breeding program and three populations were used for scald resistance screening using 25 DNA markers that are located very close to scald resistance gene(s) on barley chromosomes. Only five of those markers clearly discriminated co-dominantly between resistant and susceptible plants. These markers, Ebmac0871- SSR, HVS3-SCAR, Bmag0006-SSR, reside on different arms of barley chromosome 3H. Ebmac871 is localized on the short arm of 3H and HVS3 and Bmag0006 are localized on the long arm of 3H. This result indicates that the scald resistance genes which they tag are probably close to the centromeric region of this chromosome. Scald resistance from several sources map to the proximal region of the long arm of chromosome 3H, forming the complex Rrs1 locus. The availability of highly polymorphic markers for the discrimination of breeding material would be extremely useful for barley breeders to select for the trait at the DNA level rather than relying on phenotypic expression and infection reaction.
Źródło:
Journal of Plant Protection Research; 2018, 58, 4
1427-4345
Pojawia się w:
Journal of Plant Protection Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
FPGA implementation of logarithmic versions of Baum-Welch and Viterbi algorithms for reduced precision hidden Markov models
Autorzy:
Pietras, M.
Klęsk, P.
Powiązania:
https://bibliotekanauki.pl/articles/201874.pdf
Data publikacji:
2017
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
hidden Markov models
numerical stability
Viterbi algorithm
parallel architecture
field-programmable gate array
ukryte modele Markowa
stabilność numeryczna
Algorytm Viterbiego
architektura równoległa
Opis:
This paper presents a programmable system-on-chip implementation to be used for acceleration of computations within hidden Markov models. The high level synthesis (HLS) and “divide-and-conquer” approaches are presented for parallelization of Baum-Welch and Viterbi algorithms. To avoid arithmetic underflows, all computations are performed within the logarithmic space. Additionally, in order to carry out computations efficiently – i.e. directly in an FPGA system or a processor cache – we postulate to reduce the floating-point representations of HMMs. We state and prove a lemma about the length of numerically unsafe sequences for such reduced precision models. Finally, special attention is devoted to the design of a multiple logarithm and exponent approximation unit (MLEAU). Using associative mapping, this unit allows for simultaneous conversions of multiple values and thereby compensates for computational efforts of logarithmic-space operations. Design evaluation reveals absolute stall delay occurring by multiple hardware conversions to logarithms and to exponents, and furthermore the experiments evaluation reveals HMMs computation boundaries related to their probabilities and floating-point representation. The performance differences at each stage of computation are summarized in performance comparison between hardware acceleration using MLEAU and typical software implementation on an ARM or Intel processor.
Źródło:
Bulletin of the Polish Academy of Sciences. Technical Sciences; 2017, 65, 6; 935-946
0239-7528
Pojawia się w:
Bulletin of the Polish Academy of Sciences. Technical Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
    Wyświetlanie 1-2 z 2

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