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    Wyświetlanie 1-5 z 5
    Tytuł:
    Helicosporidia: a genomic snapshot of an early transition to parasitism
    Autorzy:
    Sun, Y.
    Pombert, J.-F.
    Powiązania:
    https://bibliotekanauki.pl/articles/58197.pdf
    Data publikacji:
    2014
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Tematy:
    Helicosporidium
    green alga
    alga
    comparative genomics
    entomopathogen
    parasitism
    parasite
    invertebrate
    Opis:
    Helicosporidia are gut parasites of invertebrates. These achlorophyllous, non-photosynthetic green algae are the first reported to infect insects. Helicosporidia are members of the green algal class Trebouxiophyceae and are further related to the photosynthetic and non-photosynthetic genera Auxenochlorella and Prototheca, respectively, the latter of which can also turn to parasitism under opportunistic conditions. Molecular analyses suggest that Helicosporidia diverged from other photosynthetic trebouxiophytes less than 200 million years ago and that its adaptation to parasitism is therefore recent. In this minireview, we summarize the current knowledge of helicosporidian genomics. Unlike many well-known parasitic lineages, the Helicosporidium sp. organelle and nuclear genomes have lost surprisingly little in terms of coding content aside from photosynthesis-related genes. While the small size of its nuclear genome compared to other sequenced trebouxiophycean representatives suggests that Helicosporidium is going through a streamlining process, this scenario cannot be ascertained at this stage. Genome expansions and contractions have occurred independently multiple times in the green algae, and the small size of the Helicosporidium genome may reflect a lack of expansion from a lean ancestor state rather than a tendency towards reduction.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2014, 83, 4
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    De novo sequencing and comparative transcriptome analysis of white petals and red labella in Phalaenopsis for discovery of genes related to flower color and floral differentiation
    Autorzy:
    Yang, Y.
    Wang, J.
    Ma, Z.
    Sun, G.
    Zhang, C.
    Powiązania:
    https://bibliotekanauki.pl/articles/58306.pdf
    Data publikacji:
    2014
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Tematy:
    sequencing
    RNA sequence
    transcriptome
    Phalaenopsis
    gene
    flower
    colour
    floral differentiation
    diversity
    Opis:
    Phalaenopsis is one of the world’s most popular and important epiphytic monopodial orchids. The extraordinary floral diversity of Phalaenopsis is a reflection of its evolutionary success. As a consequence of this diversity, and of the complexity of flower color development in Phalaenopsis, this species is a valuable research material for developmental biology studies. Nevertheless, research on the molecular mechanisms underlying flower color and floral organ formation in Phalaenopsis is still in the early phases. In this study, we generated large amounts of data from Phalaenopsis flowers by combining Illumina sequencing with differentially expressed gene (DEG) analysis. We obtained 37 723 and 34 020 unigenes from petals and labella, respectively. A total of 2736 DEGs were identified, and the functions of many DEGs were annotated by BLAST-searching against several public databases. We mapped 837 up-regulated DEGs (432 from petals and 405 from labella) to 102 Kyoto Encyclopedia of Genes and Genomes pathways. Almost all pathways were represented in both petals (102 pathways) and labella (99 pathways). DEGs involved in energy metabolism were significantly differentially distributed between labella and petals, and various DEGs related to flower color and floral differentiation were found in the two organs. Interestingly, we also identified genes encoding several key enzymes involved in carotenoid synthesis. These genes were differentially expressed between petals and labella, suggesting that carotenoids may influence Phalaenopsis flower color. We thus conclude that a combination of anthocyanins and/or carotenoids determine flower color formation in Phalaenopsis. These results broaden our understanding of the mechanisms controlling flower color and floral organ differentiation in Phalaenopsis and other orchids.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2014, 83, 3
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Production of intergeneric allotetraploid between autotetraploid non-heading Chinese cabbage (Brassica campestris ssp. chinensis Makino) and autotetraploid radish (Raphanus sativus L.)
    Autorzy:
    Sun, C.-Z.
    Li, Y.
    Zhang, S.-N.
    Zheng, J.-S.
    Powiązania:
    https://bibliotekanauki.pl/articles/56661.pdf
    Data publikacji:
    2014
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Tematy:
    intergeneric allotetraploid
    autotetraploid
    non-heading cabbage
    Chinese cabbage
    Brassica campestris ssp.chinensis
    radish
    Raphanus sativus
    embryo culture
    simple sequence repeat
    Opis:
    Intergeneric hybrids between non-heading Chinese cabbage (Brassica campestris ssp. chinensis Makino; 2n = 4x = 40) and radish (Raphanus sativus L.; 2n = 4x = 36) were obtained through ovary culture and embryo rescue. Some hybrid embryos (0.11 per ovary) were produced, but only 4 of them germinated. As most hybrid embryos failed to develop into plantlets directly, plants were regenerated by inducing shoots on the cultured cotyledon and inducing roots on the root induction medium. All hybrid plants were morphologically uniform. They resembled the non-heading Chinese cabbage in the long-lived habit, the plant status, the vernalization requirement and the petiole color, while the petiole shape, leaf venation pattern and flowers were more similar to those of radish. Upon examination of the flowers, these were found to have normal pistil, but rudimentary anthers with non-functional pollen grains. The somatic chromosome number of F1 plants was 38. Analysis of SSR banding patterns provided additional confirmation of hybridity.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2014, 83, 1
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Responses of plant species to different aboveground removal treatments with implications for vegetation restoration in the Mu Us Sandland (Inner Mongolia)
    Autorzy:
    Li, H.
    Yi, S.
    Lai, L.
    Zhou, J.
    Sun, Q.
    Jiang, L.
    Gao, Y.
    An, P.
    Shimizu, H.
    Zheng, Y.
    Powiązania:
    https://bibliotekanauki.pl/articles/57151.pdf
    Data publikacji:
    2019
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Opis:
    It is generally assumed that plants can respond to varying degrees of physical damage by growth compensation via resprouting, and resprouting is a key functional trait in many species. Few studies have investigated how grass and shrub species distributed in moving dunes and semifixed dunes in semiarid areas respond to the combined effects of temperature and shoot removal. Medicago sativa, Artemisia ordosica, and Artemisia sphaerocephala plants were grown in a glasshouse for 8 weeks at air temperatures of 10/20°C, 12.5/22.5°C, 15/25°C, and 17.5/27.5°C (night/day) and were subjected to treatments of removing all leaves (LR), removing all leaves followed by cutting at half the plant height (HC), and removing all aboveground tissue (WC). The species, temperature, and damage extent had significant effects on the shoot number, leaf mass ratio, leaf area ratio and ratio of belowground to aboveground dry matter, and the species had a significant effect on the net assimilation rate, specific leaf area, and total biomass. The three species grew well under the HC and LR treatments, and high temperatures (15/25°C and 17.5/27.5°C) significantly promoted the regrowth of the three species. Medicago sativa grew faster than the two Artemisia species. Medicago sativa can be used for fertilizing or vegetation restoration in unimportant conservation areas, and the two Artemisia species can be effectively used for vegetation restoration in the Mu Us Sandland. Due to the low labor costs and the local climate conditions, plants should be clipped before the beginning of the main growing season (end of May or early June) to ensure rapid growth.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2019, 88, 1
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Identification, evaluation, and application of the genomic-SSR loci in ramie
    Autorzy:
    Luan, M.-B.
    Yang, Z.-M.
    Zhu, J.-J.
    Deng, X.
    Liu, C.-C.
    Wang, X.-F.
    Xu, Y.
    Sun, Z.-M.
    Chen, J.-H.
    Powiązania:
    https://bibliotekanauki.pl/articles/57981.pdf
    Data publikacji:
    2016
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Opis:
    To provide a theoretical and practical foundation for ramie genetic analysis, simple sequence repeats (SSRs) were identified in the ramie genome and employed in this study. From the 115 369 sequences of a specific-locus amplified fragment library, a type of reduced representation library obtained by high-throughput sequencing, we identified 4774 sequences containing 5064 SSR motifs. SSRs of ramie included repeat motifs with lengths of 1 to 6 nucleotides, and the abundance of each motif type varied greatly. We found that mononucleotide, dinucleotide, and trinucleotide repeat motifs were the most prevalent (95.91%). A total of 98 distinct motif types were detected in the genomic-SSRs of ramie. Of them, The A/T mononucleotide motif was the most abundant, accounting for 41.45% of motifs, followed by AT/TA, accounting for 20.30%. The number of alleles per locus in 31 polymorphic microsatellite loci ranged from 2 to 7, and observed and expected heterozygosities ranged from 0.04 to 1.00 and 0.04 to 0.83, respectively. Furthermore, molecular identity cards (IDs) of the germplasms were constructed employing the ID Analysis 3.0 software. In the current study, the 26 germplasms of ramie can be distinguished by a combination of five SSR primers including Ibg5-5, Ibg3-210, Ibg1-11, Ibg6-468, and Ibg6-481. The allele polymorphisms produced by all SSR primers were used to analyze genetic relationships among the germplasms. The similarity coefficients ranged from 0.41 to 0.88. We found that these 26 germplasms were clustered into five categories using UPGMA, with poor correlation between germplasm and geographical distribution. Our study is the first large-scale SSR identification from ramie genomic sequences. We have further studied the SSR distribution pattern in the ramie genome, and proposed that it is possible to develop SSR loci from genomic data for population genetics studies, linkage mapping, quantitative trait locus mapping, cultivar fingerprinting, and as genetic diversity studies.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2016, 85, 3
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
      Wyświetlanie 1-5 z 5

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