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Wyszukujesz frazę "phylogenetic analysis" wg kryterium: Temat


Tytuł:
First Report on Fusarium brachygibbosum Isolate FIR 16_ITS Isolated from Iraqi Wheat Plant
Autorzy:
Ali, Hamdia Z.
Hameed, Mahdi S.
Abdulrahman, Abdulrahman A.
Saood, Hutham M.
Powiązania:
https://bibliotekanauki.pl/articles/123408.pdf
Data publikacji:
2020
Wydawca:
Polskie Towarzystwo Inżynierii Ekologicznej
Tematy:
phylogenetic analysis
rDNA
Iraq
Opis:
In this study, the Fusarium Brachygibbosum fungus isolate FIR 16_ITS was isolated for the first time from the infected wheat plants in Iraq, during the winter of 2018, in the AL-Tewatha region – 20 km south east of Baghdad. In order to verify the identity of the species of the F. brachygibbosum isolate FIR 16_ITS with the growth symptoms on the wheat plants, the wheat seeds and tissue plants were obtained and used as a source for the re-isolation of the infection agent. F. brachygibbosum isolate FIR 16_ITS was hardly identified using visual approach. However, a molecular technique is important in verifying the species of F. brachygibbosum isolate FIR 16_ITS. The isolate obtained was used for the extraction of DNA and later used for the molecular identification and phylogenetic analyses based on rDNA-internal transcribed region (ITS) primer sets. The authors successfully obtained the amplified products of the ITS-rDNA region, and a sequence analysis indicated that the Fusarium sp. isolate FIR 16_ITS species screened in this study belonged to the F. brachygibbosum species. It was recorded in the NCBI under the following information NCBI; BioSample; Accession no.; SAMN11408139; ID: 11408139 and NCBI; BioProject; Accession no.; PRJNA532637; ID: 679434 (Locus Tag Prefix; E7750).
Źródło:
Journal of Ecological Engineering; 2020, 21, 3; 81-86
2299-8993
Pojawia się w:
Journal of Ecological Engineering
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Emergence and complete genome of Senecavirus A in pigs of Henan Province in China, 2017
Autorzy:
Wang, H.B.
Tian, B.
Lv, H.L.
Wang, F.
Zhang, T.
Wang, C.Y.
Zhang, Y.D.
Dong, J.J.
Powiązania:
https://bibliotekanauki.pl/articles/2087575.pdf
Data publikacji:
2019
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Senecavirus A
vesicular disease
phylogenetic analysis
Źródło:
Polish Journal of Veterinary Sciences; 2019, 1; 187-190
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Sequence variants of Yersinia enterocolitica ystB gene detected in wild animals in Poland
Autorzy:
Pieczywek, M.
Bancerz-Kisiel, A.
Szczerba-Turek, A.
Szweda, W.
Powiązania:
https://bibliotekanauki.pl/articles/2087747.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Yersinia enterocolitica
ystB gene
phylogenetic analysis
Źródło:
Polish Journal of Veterinary Sciences; 2018, 21, 2; 397-399
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Mapping of the influenza A hemagglutinin serotypes evolution by the ISSCOR method
Autorzy:
Radomski, Jan
Słonimski, Piotr
Zagórski-Ostoja, Włodzimierz
Borowicz, Piotr
Powiązania:
https://bibliotekanauki.pl/articles/1039244.pdf
Data publikacji:
2014
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
ISSCOR descriptors
phylogenetic analysis
influenza virus
hemagglutinin
phylogenetic maps
Opis:
Analyses and visualizations by the ISSCOR method of influenza virus hemagglutinin genes of different A-subtypes revealed some rather striking temporal relationships between groups of individual gene subsets. Based on these findings we consider application of the ISSCOR-PCA method for analyses of large sets of homologous genes to be a worthwhile addition to a toolbox of genomics - allowing for a rapid diagnostics of trends, and ultimately even aiding an early warning of newly emerging epidemiological threats.
Źródło:
Acta Biochimica Polonica; 2014, 61, 3; 441-451
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genetic variation and phylogenetic analysis of rabbit haemorrhagic disease virus (rhdv) strains
Autorzy:
Hukowska-Szematowicz, Beata
Tokarz-Deptuła, Beata
Deptuła, Wiesław
Powiązania:
https://bibliotekanauki.pl/articles/1039628.pdf
Data publikacji:
2012
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
genetic variation
RHD virus
phylogenetic analysis
genogroup
Opis:
Rabbit haemorrhagic disease virus (RHDV) belongs to the family Caliciviridae and is the etiological agent of the haemorrhagic disease, also known as rabbit plague. Its genome is a linear single-stranded (ss) RNA of 7437 nucleotides and the capsid is built from a single structural protein VP60. In connection with the discovery of new RHDV strains, there is a constant need to investigate the genetic variation of this virus and perform phylogenetic analyses which may show the evolutionary relationships among the RHDV strains. Studies on the divergence of RHDV have shown that it is genetically quite stable, although recent observations indicate that some new RHDV strains, significantly different from the original RHDV subtype and the new RHDVa subtype, are appearing. These latest findings suggest that a new group of RHDV strains has evolved. The present review summarizes the current knowledge on the genetic variation and the latest achievements in phylogenetic analyses of RHDV strains isolated in various countries.
Źródło:
Acta Biochimica Polonica; 2012, 59, 4; 459-465
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Isolation and sequence analysis of the complete VP2 gene of canine parvovirus from Chinese domestic pets and determination of the pathogenesis of these circulating strains in beagles
Autorzy:
Chen, M.R.
Guo, X.Y.
Wang, Z.Y.
Jiang, Y.T.
Yuan, W.F.
Xin, T.
Hou, S.H.
Song, T.Q.
Lin, W.D.
Zhu, H.F.
Jia, H.
Powiązania:
https://bibliotekanauki.pl/articles/2087542.pdf
Data publikacji:
2019
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
canine parvovirus
molecular epidemiology
phylogenetic analysis
pathogenesis
Źródło:
Polish Journal of Veterinary Sciences; 2019, 2; 287-296
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Morphological and Morphogenetic Redescriptions and SSU rRNA Gene-based Phylogeny of the Poorly-known Species Euplotes amieti Dragesco, 1970 (Ciliophora, Euplotida)
Autorzy:
LIU, Mingjian
FAN, Yangbo
MIAO, Miao
Hu, Xiaozhong
Al-Rasheid, Khaled A. S.
Al-Farraj, Saleh A.
Ma, Honggang
Powiązania:
https://bibliotekanauki.pl/articles/763760.pdf
Data publikacji:
2015
Wydawca:
Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
Tematy:
Euplotidae, fresh water ciliate, ontogenesis, phylogenetic analysis, taxonomy
Opis:
This paper investigates the morphology and morphogenesis during binary fission of a Chinese population of Euplotes amieti Dragesco, 1970, a fresh water form which has previously not been well defined. This organism is morphologically very similar to the well-known Euplotes eurystomus but differs from the latter both in the number of dorsal kineties and the molecular data. According to the information obtained, it is characterized by a combination of features including nine frontoventral cirri, ca. 60 membranelles, 12–15 dorsal kineties, a macronucleus in the shape of the number 3, and a ‘double-eurystomus’ type of silverline system. Its morphogenesis proceeds broadly in the same pattern as in its congeners. In this study, the SSU rRNA gene was sequenced for the first time, and phylogenetic analyses indicated that it is closely related to the eurystomus-aediculatus-woodruffi- complex. Considering the extreme similarities in morphology between E. amieti and E.eurystomus, we believe that the four sequences (four isolates) under the name of Euplotes eurystomus (No. FR873716; FR873717; EF193250; AJ310491 deposited in GenBank) are very likely from misidentified material; that is, they represent different populations of Euplotes amieti.
Źródło:
Acta Protozoologica; 2015, 54, 3
1689-0027
Pojawia się w:
Acta Protozoologica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Molecular cloning, sequence analysis and developmental stage expression of a putative septin gene fragment from Aedes albopictus (Diptera: Culicidae)
Autorzy:
Avicor, Silas
Wajidi, Mustafa
Jaal, Zairi
Yahaya, Zary
Powiązania:
https://bibliotekanauki.pl/articles/1038803.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Biochemiczne
Tematy:
Aedes albopictus
cytokinesis
developmental stages
phylogenetic analysis
septin
Opis:
Septins belong to GTPases that are involved in vital cellular activities, including cytokinesis. Although present in many organisms, they are yet to be isolated from Aedes albopictus. This study reports for the first time on a serendipitous isolation of a partial septin sequence from Ae. albopictus and its developmental expression profile. The Ae. albopictus partial septin sequence contains 591 nucleotides encoding 197 amino acids. It shares homology with several insect septin genes and has a close phylogenetic relationship with Aedes aegypti and Culex quinquefasciatus septins. The Ae. albopictus septin fragment was differentially expressed in the mosquito's developmental stages, with an increased expression in the adults.
Źródło:
Acta Biochimica Polonica; 2016, 63, 2; 243-246
0001-527X
Pojawia się w:
Acta Biochimica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Genotyping and pathogenic characterization of canine distemper virus based on mutations in the hemagglutinin gene in Chinese domestic dogs
Autorzy:
Chen, M.
Xin, T.
Hou, S.
Lin, W.
Song, W.
Zhu, H.
Huang, K.
Jia, H.
Powiązania:
https://bibliotekanauki.pl/articles/2087680.pdf
Data publikacji:
2018
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
canine distemper virus
hemagglutinin
phylogenetic analysis
animal infection
Źródło:
Polish Journal of Veterinary Sciences; 2018, 21, 3; 623-629
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic Characters in the Humerus and Tarsometatarsus of Penguins
Autorzy:
Hoffmeister, Martín Chávez
Powiązania:
https://bibliotekanauki.pl/articles/2051142.pdf
Data publikacji:
2014
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Sphenisciformes
limb bones
phylogenetic analysis
parsimony method
revised dataset
Źródło:
Polish Polar Research; 2014, 3; 469-496
0138-0338
2081-8262
Pojawia się w:
Polish Polar Research
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Phylogenetic analyses of Bartonella sp. (Bacteria) of rodents from four separated valleys in Sinai Mountains (Egypt)
Autorzy:
Alsarraf, M.
Mohallal, E.M.
Kwiatowski, J.
Mierzejewska, E.J.
Welc-Faleciak, R.
Behnke, J.M.
Bajer, A.
Powiązania:
https://bibliotekanauki.pl/articles/6477.pdf
Data publikacji:
2016
Wydawca:
Polskie Towarzystwo Parazytologiczne
Tematy:
phylogenetic analysis
Bartonella
bacteria
rodent
valley
Sinai Mount
Egypt
Źródło:
Annals of Parasitology; 2016, 62, Suppl.
0043-5163
Pojawia się w:
Annals of Parasitology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
The first detection of the sequence of bacteria from the Simkaniaceae family in surface waters in Poland
Autorzy:
Pawlikowska-Warych, M.
Deptuła, W.
Powiązania:
https://bibliotekanauki.pl/articles/2087599.pdf
Data publikacji:
2019
Wydawca:
Polska Akademia Nauk. Czytelnia Czasopism PAN
Tematy:
Simkaniaceae
surface water
phylogenetic analysis
OdraWCh30 sequence
Polska
Źródło:
Polish Journal of Veterinary Sciences; 2019, 1; 61-65
1505-1773
Pojawia się w:
Polish Journal of Veterinary Sciences
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
First molecular characterization of Dobrava-Belgrade virus found in Apodemus flavicollis in Poland
Autorzy:
Kolodziej, M.
Melgies, A.
Joniec-Wiechetek, J.
Michalski, A.
Nowakowska, A.
Pitucha, G.
Niemcewicz, M.N.
Powiązania:
https://bibliotekanauki.pl/articles/2081717.pdf
Data publikacji:
2018
Wydawca:
Instytut Medycyny Wsi
Tematy:
Polska
phylogenetic analysis
Apodemus flavicollis
Dobrava-Belgrade virus
orthohantaviruses
Opis:
Introduction. Dobrava-Belgrade virus (DOBV) is one of the emerging pathogens which have been reported during the last decades in Europe and have attracted the attention of researchers. The course of infection among humans may have a varied course – from the completely asymptomatic to the more severe forms, such as haemorrhagic fever with renal syndrome (HFRS). DOBV is hosted and carried by rodents like Apodemus flavicollis or A. agrarius, which occur commonly in Europe. Objective. To-date, orthohantaviruses have been reported in Poland, both in humans and animals, but detailed countryscale studies have not yet been carried out. The aim of the study was molecular characterization of a strain which was found in A. flavicollis in south-eastern Poland. Materials and method. The phylogenetic analysis of the first Dobrava-Belgrade virus found in A. flavicollis in the subcarpathian region of south-eastern Poland, presented in this study, was performed after virus proliferation in cell culture and sequencing of specific PCR products. Results. Based on genetic sequences of fragments of three segments (S, M and L), the isolated virus was assigned to the Dobrava genotype, taking into consideration the most current classification of the DOBV species. Conclusions. The Dobrava-Belgrade virus strain isolated from A. flavicollis in the subcarpathian region of south-eastern Poland, has been molecularly characterized and assigned to Dobrava genotype, thereby the occurrence of that genotype in Poland has been confirmed by molecular techniques.
Źródło:
Annals of Agricultural and Environmental Medicine; 2018, 25, 2; 368-373
1232-1966
Pojawia się w:
Annals of Agricultural and Environmental Medicine
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Antimicrobial activities and phylogenetic study of Erythrina senegalensis DC (Fabaceae) seed lectin
Autorzy:
Enoma, Samuel
Adewole, Taiwo S.
Agunbiade, Titilayo O.
Kuku, Adenike
Powiązania:
https://bibliotekanauki.pl/articles/16672367.pdf
Data publikacji:
2023
Wydawca:
Polska Akademia Nauk. Czasopisma i Monografie PAN
Tematy:
antimicrobial
Erythrina senegalensis
lectin
phylogenetic analysis
polymerase chain reaction
Opis:
Erythrina senegalensis (Fabaceae) have been traditionally used in the treatment of microbial ailments, and the specific agent mediating its efficacy has been investigated in several studies. In this study, the antimicrobial activity of purified E. senegalensis lectin (ESL) was analyzed. The phylogenetic relationship of the gene encoding lectin with other legume lectins was also established to investigate their evolutionary relationship via comparative genomics. Antimicrobial activity of ESL against selected pathogenic bacteria and fungi isolates was evaluated by the agar well diffusion method, using fluconazole (1 mg/ml) and streptomycin (1 mg/ml) as positive controls for fungi and bacteria sensitivity, respectively. Potent antimicrobial activity of ESL against Erwinia carotovora, Pseudomonas aeruginosa, Klebsiella pneumonia, Staphylococcus aureus, Aspergillus niger, Penicillium camemberti, and Scopulariopsis brevicaulis was observed, with inhibition zones ranging from 18 to 24 mm. Minimum inhibitory concentrations of ESL ranged between 50 and 400 μg/ml. Primer-directed polymerase chain reaction of E. senegalensis genomic DNA detected a 465-bp lectin gene with an open reading frame encoding a 134-amino acid polypeptide. The obtained nucleotide sequence of the ESL gene shared high sequence homology: 100, 100, and 98.18% with Erythrina crista-galli, Erythrina corallodendron, and Erythrina variegata lectin genes, respectively, suggesting that the divergence of Erythrina lectins might follow species evolution. This study concluded that ESL could be used to develop lectin-based antimicrobials, which could find applications in the agricultural and health sectors.
Źródło:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology; 2023, 104, 1; 21-32
0860-7796
Pojawia się w:
BioTechnologia. Journal of Biotechnology Computational Biology and Bionanotechnology
Dostawca treści:
Biblioteka Nauki
Artykuł
Tytuł:
Avialan status for Oviraptorosauria
Autorzy:
Maryanska, T
Osmolska, H.
Wolsan, M.
Powiązania:
https://bibliotekanauki.pl/articles/23106.pdf
Data publikacji:
2002
Wydawca:
Polska Akademia Nauk. Instytut Paleobiologii PAN
Tematy:
bird
Avialae
phylogenetic analysis
Cretaceous
phylogenetic nomenclature
Theropoda
Dinosauria
dinosaur
Oviraptorosauria
paleontology
Opis:
Oviraptorosauria is a clade of Cretaceous theropod dinosaurs of uncertain affinities within Maniraptoriformes. All previous phylogenetic analyses placed oviraptorosaurs outside a close relationship to birds (Avialae), recognizing Dromaeosauridae or Troodontidae, or a clade containing these two taxa (Deinonychosauria), as sister taxon to birds. Here we present the results of a phylogenetic analysis using 195 characters scored for four outgroup and 13 maniraptoriform (ingroup) terminal taxa, including new data on oviraptorids. This analysis places Oviraptorosauria within Avialae, in a sister−group relationship with Confuciusornis. Archaeopteryx, Therizinosauria, Dromaeosauridae, and Ornithomimosauria are successively more distant outgroups to the Confuciusornis−oviraptorosaur clade. Avimimus and Caudipteryx are successively more closely related to Oviraptoroidea, which contains the sister taxa Caenagnathidae and Oviraptoridae. Within Oviraptoridae, “Oviraptor” mongoliensis and Oviraptor philoceratops are successively more closely related to the Conchoraptor−Ingenia clade. Oviraptorosaurs are hypothesized to be secondarily flightless. Emended phylogenetic definitions are provided for Oviraptoridae, Caenagnathidae, Oviraptoroidea, Oviraptorosauria, Avialae, Eumaniraptora, Maniraptora, and Maniraptoriformes.
Źródło:
Acta Palaeontologica Polonica; 2002, 47, 1
0567-7920
Pojawia się w:
Acta Palaeontologica Polonica
Dostawca treści:
Biblioteka Nauki
Artykuł

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