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    Tytuł:
    Phylogeny and Synonymy of Gyrodinium heterostriatum comb. nov. (Dinophyceae), a Common Unarmored Dinoflagellate in the World Oceans
    Autorzy:
    Gómez, Fernando
    Artigas, Luis Felipe
    Gast, Rebecca J.
    Powiązania:
    https://bibliotekanauki.pl/articles/52062719.pdf
    Data publikacji:
    2020
    Wydawca:
    Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
    Tematy:
    Dinophyta
    Gymnodinium
    new combination
    taxonomy
    molecular phylogenetics
    North Atlantic
    Opis:
    The North Sea and the English Channel are regions with a long tradition of plankton studies, where the colony-forming haptophyte Phaeocystis globosa dominates the spring phytoplankton blooms. Among its predators, we investigated an abundant unarmored dinoflagellate (~3000 cells per liter) in the North Sea in May 2019. It has been reported in the literature as Gymnodinium heterostriatum or G. striatissimum, and often identified as Gyrodinium spirale. Phylogenetic analyses using the small-, large subunit- and Internal Transcriber Spacers of the ribosomal RNA (SSU-, LSU-, ITS rRNA) gene sequences indicate that our isolates clustered within the Gyrodinium clade. The new sequences formed a sister group with sequences of the freshwater taxon Gyrodinium helveticum, being one of the infrequent marine-freshwater transitions in the microbial world. This isolate is the first characterized member of a clade of numerous environmental sequences widely distributed from cold to tropical seas. This common and abundant taxon has received several names due to its morphological plasticity (changes of size and shape, often deformed after engulfing prey) and the difficulty in discerning surface striation. We conclude that the priority is for the species name Gymnodinium heterostriatum Kofoid & Swezy 1921, a new name that was proposed for Gymnodinium spirale var. obtusum sensu Dogiel 1906. The species Gyrodinium striatissimum (Hulburt 1957) Gert Hansen & Moestrup 2000 and Gymnodinium lucidum D. Ballantine in Parke & Dixon 1964 (=G. hyalinum M. Lebour 1925) are posterior synonyms. We propose Gyrodinium heterostriatum comb. nov. for Gymnodinium heterostriatum.
    Źródło:
    Acta Protozoologica; 2020, 59, 2; 77-98
    0065-1583
    1689-0027
    Pojawia się w:
    Acta Protozoologica
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Molecular Phylogeny of the Sand-dwelling Dinoflagellate Planodinium striatum and Chrysodinium gen. nov. for Plagiodinium ballux (Dinophyceae)
    Autorzy:
    Gómez, Fernando
    Nakamura, Yasuhide
    Artigas, Luis F.
    Powiązania:
    https://bibliotekanauki.pl/articles/52229628.pdf
    Data publikacji:
    2019
    Wydawca:
    Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
    Tematy:
    benthic Dinophyta
    microphytobenthos
    molecular phylogeny
    new genus
    Podolampadaceae
    psammophilic Dinophyceae.
    Opis:
    The molecular phylogeny of the sand-dwelling dinoflagellate Planodinium striatum was investigated from isolates collected in the NE English Channel. In the SSU rRNA gene phylogeny, the sequences of Planodinium clustered with the type species of Plagiodinium, P. belizeanum, and more distantly related to Plagiodinium ballux. Although the SSU rRNA gene sequences of Planodinium showed a high percentage of identity (96%) with partial sequences of species of Podolampas (~1200 base pairs), the SSU rRNA gene phylogenies did not show a relationship with the clade of the Podolampadaceae (Podolampas, Blepharocysta, Roscoffia), neither with the sequences of the sanddwelling genus Cabra. The SSU rRNA gene sequences of Plagiodinium belizeanum and P. ballux showed a low percentage of identity (96%) clustering in separate clades in the SSU rRNA gene phylogeny with Planodinium. The morphology of P. ballux and its generic type differed in the plate arrangement and the morphology of the cingulum, amongst other features. Based on the morphological and molecular differences, we propose the new genus Chrysodinium gen. nov. for P. ballux, with the re-interpreted thecal plate formula Po 3’ 1’’ 7c 2s 5’’’ 1’’’’.
    Źródło:
    Acta Protozoologica; 2019, 58, 3; 115-124
    0065-1583
    1689-0027
    Pojawia się w:
    Acta Protozoologica
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Problematic Biases in the Availability of Molecular Markers in Protists: The Example of the Dinoflagellates
    Autorzy:
    Gómez, Fernando
    Powiązania:
    https://bibliotekanauki.pl/articles/763541.pdf
    Data publikacji:
    2014
    Wydawca:
    Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
    Tematy:
    Alveolate, Dinophyceae, Dinophyta, DNA barcoding, microbial diversity, molecular phylogeny, unicellular eukaryotes
    Opis:
    Dinoflagellates (Alveolata, Dinophyceae) are protists with a truly remarkable diversity in lifestyles (free-living, parasites and mutualistic symbionts), habitats (marine, freshwater, plankton, benthos), and trophic modes (heterotrophic, plastid-containing). Here dinoflagellates are used to evaluate biases in the availability of molecular markers in relation to the variety of functional and ecological characteristics of protists. A large number of dinoflagellate sequences are available in GenBank, at least one for 56% of the 264 described genera. The most common marker is the small ribosomal subunit ribosomal DNA (49%). At the species level, SSU rDNA or the large subunit rDNA are available for 15% of the 2,386 described species. Availability of sequences of the internal transcribed spacers (ITS) and cytochrome oxidase I (COI) show a strong bias towards cultivable species. Relative to trophic mode, while about half of the known dinoflagellates are heterotrophic, only 12% of them have been sequenced compared to 29% of the plastid-containing species. For the COI marker availability is 10 times greater for plastid-containing compared to heterotrophic species. Freshwater species are underrepresented (13%) relative to the marine forms (22%). A high proportion of benthic species have been sequenced (46%) reflecting interest in Symbiodinium and harmful epiphytic taxa. Most of the relatively few described mutualistic species have been sequenced (> 80%). In contrast, only 17% of the described parasitic species have been sequenced, and most of the available sequences were not identified at the species level. In recent years, new species have been described mostly from coastal blooms or cultures. These studies are favored by the availability of abundant material for detailed studies of ultrastructure and multi-gene molecular phylogenies. Many methods are difficult to apply for the scarce specimens available from the open ocean. The requirement of these protocols, easy to apply with cultured species, is an obstacle in our knowledge of the open ocean diversity because it discourages studies based on sparse material. Consequently, in recent years descriptions of new species from the open ocean have declined considerably.
    Źródło:
    Acta Protozoologica; 2014, 53, 1
    1689-0027
    Pojawia się w:
    Acta Protozoologica
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Detection of Prorocentrum shikokuense in the Mediterranean Sea and evidence that P. dentatum, P. obtusidens and P. shikokuense are three different species (Prorocentrales, Dinophyceae)
    Autorzy:
    Gómez, Fernando
    Zhang, Huan
    Roselli, Leonilde
    Lin, Senjie
    Powiązania:
    https://bibliotekanauki.pl/articles/2041940.pdf
    Data publikacji:
    2022-02-14
    Wydawca:
    Uniwersytet Jagielloński. Wydawnictwo Uniwersytetu Jagiellońskiego
    Tematy:
    Dinophyta
    harmful algae bloom
    invasive alien species
    non-indigenous species
    molecular phylogenetics
    toxic phytoplankton
    Opis:
    A dinoflagellate identified as Prorocentrum dentatum, P. shikokuense or P. donghaiense is responsible of massive harmful events. Blooms of a species identified as P. shikokuense have been recently reported in the Mediterranean Sea, and an exotic origin, tentatively introduced by ballast waters from Asia, has been hypothesized. The molecular data based on the small-, large subunit, and internal transcriber spacers ribosomal RNA gene (SSU-, LSU-, ITS rRNA) sequences confirmed P. shikokuense in the Mediterranean Sea. The Mediterranean ribotype is identical to a subtropical North Atlantic ribotype, and with slight divergence from the numerous sequences from the Pacific Ocean. To revisit the relationship between P. shikokuense (=P. donghaiense) and P. obtusidens, we provide the first micrographs of P. dentatum and P. obtusidens, the latter collected from the type locality. Our observations indicate that P. dentatum, P. obtusidens, and P. shikokuense are three different species. Their diagnostic morphological characters are: Prorocentrum dentatum is 44–60 μm long, leaf-shaped, pointed and central posterior end, conspicuous anterior shoulder; P. obtusidens is 33–41 μm long, irregular parallelepiped, almost paralel valve margins, eccentric and pointed posterior end, moderate anterior shoulder; and P. shikokuense is <25 μm long, sunflower seed-shaped, round and centric posterior end, inconspicuous anterior shoulder.
    Źródło:
    Acta Protozoologica; 2021, 60; 47-59
    1689-0027
    Pojawia się w:
    Acta Protozoologica
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
    Tytuł:
    Epilithic algae from caves of the Krakowsko-Czestochowska Upland [Southern Poland]
    Autorzy:
    Czerwik-Marcinkowska, J
    Mrozinska, T.
    Powiązania:
    https://bibliotekanauki.pl/articles/57809.pdf
    Data publikacji:
    2009
    Wydawca:
    Polskie Towarzystwo Botaniczne
    Tematy:
    alga
    Polska
    ultrastructure
    Bacillariophyceae
    Chrysophyta
    epilithic species
    Chlorophyta
    Xanthophyceae
    Eustigmatophyceae
    Dinophyta
    epilithic alga
    Krakow-Czestochowa Upland
    cave
    Opis:
    This paper describes the first study of algae assemblages in 20 caves in the Krakowsko-Częstochowska Upland (Southern Poland), in the period between 2005-2006. The investigations showed mostly on epilithic algae and their subaeric habitats (rock faces within caves and walls at cave entrances). The morphological and cytological variability of algae were studied in fresh samples, in cultures grown on agar plates and in SPURR preparations. A total of 43 algae species was identified, mostly epilithic species and tolerant of low light intensities. The largest group was formed by representatives of the division Chlorophyta (24 species), and then the division Chrysophyta (Heterokontophyta) - 17 species, with 9 species belonging to the class Bacillariophyceae, 7 species - Xanthophyceae and 1 species representing the class Eustigmatophyceae. Dinophyta (2 species) constituted the last and the smallest group. Among the collected algae, the following species deserve special attention: Thelesphaera alpina, Bracteacoccus minor, Trachychloron simplex, Tetracystis intermedia and T. cf. isobilateralis. The last species was not earlier found in Europe. Identification of species was greatly aided by examination of cell ultrastructure, which provided an array of further features, increasing chances of correct species identification. Furthermore, the studies focused that algae, although usually remaining under dominance of cyanobacteria, excellently differentiate this special area and even enrich it.
    Źródło:
    Acta Societatis Botanicorum Poloniae; 2009, 78, 4; 301-309
    0001-6977
    2083-9480
    Pojawia się w:
    Acta Societatis Botanicorum Poloniae
    Dostawca treści:
    Biblioteka Nauki
    Artykuł
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