Viola uliginosa (bog violet) is a declining species throughout its range due to – mostly anthropogenic – drying out
of the wet habitats it occupies. Using AFLP markers, we aimed to estimate the genetic diversity in Polish populations,
that may give an insight into the situation of plant populations facing rapid loss of natural habitats.
Bog violet from several dispersed Polish populations is generally characterized by very low genetic diversity
(HT = 0.048), even lower than several other endangered violets; therefore, we suggest that it should preserve at
least EN rank in the red lists/red data books. The mean gene diversity within all populations (HS) was much lower
than gene diversity (GST) between populations (0.020 versus 0.583, respectively) which supports the prevalence
of clonal propagation of the species (mainly by stolons) but may also point to some significance of autogamy in
cleisto- and chasmogamous flowers. A high FST value and the Mantel test for all populations revealed significant
isolation by distance. Geographically neighboring pairs of populations formed genetic clusters supported by all
(in the case of two closest populations) or most statistical analyses applied. Special attention should be paid to
the locus classicus of the species in Rząska, consisting of a small number of individuals, forming a genetically
distinct group, revealing very low gene diversity (Hj = 0.009) and the longest genetic distance to the remaining
populations. Our results can contribute to planning future protection measures for the species at this and other
locations. Genetic structure of the studied populations suggests local affinities of populations but does not generally
support hypothesized recent continuity of V. uliginosa range along the river valleys of southern Poland; this
view may, however, be altered with widening of the scope of studied populations and chosen molecular markers.
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